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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G045340.3 Barley cytosol 99.8 99.8
HORVU6Hr1G049170.4 Barley plastid 100.0 99.41
Bra041120.1-P Field mustard cytosol 99.4 99.4
TraesCS5D01G459400.1 Wheat cytosol 82.94 99.05
TraesCS7B01G395800.1 Wheat cytosol 83.93 98.83
TraesCS5D01G458900.1 Wheat plastid 98.41 98.41
TraesCS5D01G011000.1 Wheat cytosol 75.4 97.94
TraesCSU01G174100.1 Wheat cytosol 82.14 97.64
HORVU1Hr1G037870.1 Barley cytosol 15.48 97.5
CAA33993 Rice plasma membrane, plastid 98.02 97.44
TraesCS1D01G181000.1 Wheat cytosol 97.02 97.02
TraesCS4D01G042900.1 Wheat cytosol 36.31 95.81
HORVU1Hr1G038040.1 Barley cytosol, mitochondrion 35.91 95.26
TraesCS1D01G070400.1 Wheat cytosol 73.81 92.54
HORVU0Hr1G009770.1 Barley cytosol 17.26 90.62
HORVU4Hr1G014040.1 Barley mitochondrion 16.67 89.36
HORVU4Hr1G014050.1 Barley mitochondrion 16.67 89.36
HORVU6Hr1G038940.1 Barley mitochondrion 13.49 74.73
HORVU3Hr1G059180.3 Barley mitochondrion 11.31 73.08
HORVU0Hr1G019920.1 Barley cytosol 6.55 67.35
HORVU3Hr1G080710.1 Barley cytosol 13.49 58.12
HORVU1Hr1G051340.1 Barley cytosol 7.14 55.38
BAV58156 Barley cytosol, plasma membrane 50.6 50.1
TraesCS5A01G207900.1 Wheat mitochondrion 22.22 49.56
HORVU0Hr1G019950.1 Barley mitochondrion 50.6 48.57
HORVU4Hr1G059400.2 Barley cytosol 10.12 43.59
KRH04726 Soybean cytosol 11.9 41.38
HORVU7Hr1G072410.1 Barley cytosol 10.91 41.04
Solyc03g033440.1.1 Tomato nucleus, plastid 6.55 30.28
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14MapMan:1.1.9.2.1Gene3D:1.20.150.20Gene3D:2.40.30.20Gene3D:3.40.50.300
EntrezGene:4525127EnsemblPlants:AGP50752EnsemblPlantsGene:AGP50752ProteinID:AGP50752ProteinID:AGP50752.1ProteinID:AMA20243.1
InterPro:ATP_synth_F1_aInterPro:ATP_synth_F1_asuInterPro:ATP_synth_asu-like_sfInterPro:ATP_synth_asu_CInterPro:ATP_synth_asu_C_sfInterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_N_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_a/bsu_ASGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006139GO:GO:0006754GO:GO:0006810GO:GO:0006811GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009579
GO:GO:0009987GO:GO:0015986GO:GO:0015992GO:GO:0016020GO:GO:0016787GO:GO:0032559
GO:GO:0045261GO:GO:0046034GO:GO:0046933GO:GO:0099132GO:GO:1902600InterPro:IPR023366
InterPro:IPR038376ENA:KC912687.1:CDS:34293..35807HAMAP:MF_01346InterPro:P-loop_NTPasePFAM:PF00006PFAM:PF00306
PFAM:PF02874ScanProsite:PS00152PANTHER:PTHR42875MetaCyc:PWY-7219GO:S4Z0E0UniProt:S4Z0E0
SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540TIGRFAMs:TIGR00962UniParc:UPI0000E8A891RefSeq:YP_874650.1
SEG:seg:::::
Description
atpAATP synthase CF1 alpha subunit
Coordinates
chrPt:+:34293..35807
Molecular Weight (calculated)
55297.9 Da
IEP (calculated)
6.708
GRAVY (calculated)
-0.068
Length
504 amino acids
Sequence
(BLAST)
001: MATLRVDEIH KILRERIEQY NRKVGIENIG RVVQVGDGIA RIIGLGEIMS GELVQFAEGT RGIALNLESK NVGIVLMGDG LMIQEGSFVK ATGRIAQIPV
101: SEAYLGRVVN ALAKPIDGKG EIIASESRLI ESPAPSIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQKGQ GVICVYVAIG
201: QRASSVAQVV TTFHEEGAME YTIVVAEMAD SPATLQYLAP YTGAALAEYF MYRERHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLNSLLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKSKLELAQF AELQAFAQFA
401: SALDKTSQNQ LARGRRLREL LKQSQANPLP VEEQIATIYT GTRGYLDSLE IEQVNKFLDE LRKHLKDTKP QFQEIISSSK TFTEQAEILL KEAIQEQLER
501: FSLQ
Best Arabidopsis Sequence Match ( ATCG00120.1 )
(BLAST)
001: MVTIRADEIS NIIRERIEQY NREVTIVNTG TVLQVGDGIA RIYGLDEVMA GELVEFEEGT IGIALNLESN NVGVVLMGDG LMIQEGSSVK ATGKIAQIPV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV
Arabidopsis Description
ATPAATP synthase subunit alpha, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.