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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol
MultiLoc:cytosol
WoLF PSORT:cytosol
 plasma membrane: 29385242
msms PMID: 29385242 doi
K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G019900.1 Wheat cytosol, extracellular, golgi, mitochondrion, nucleus, unclear 99.41 99.41
TraesCS7A01G098300.1 Wheat cytosol 99.02 99.02
TraesCS6A01G161000.1 Wheat cytosol 98.23 98.23
TraesCS4D01G137800.1 Wheat cytosol 98.04 98.04
BAC19899 Rice nucleus, plasma membrane 97.64 97.64
HORVU0Hr1G019950.1 Barley mitochondrion 100.0 96.95
TraesCS5B01G388400.1 Wheat cytosol 91.16 95.67
HORVU1Hr1G051340.1 Barley cytosol 12.18 95.38
VIT_00s0733g00010.t01 Wine grape extracellular 82.32 92.9
CDY45503 Canola cytosol 90.37 90.73
CDY45501 Canola cytosol 90.37 90.73
ATMG01190.1 Thale cress cytosol 90.37 90.73
HORVU4Hr1G059400.2 Barley cytosol 19.06 82.91
HORVU7Hr1G072410.1 Barley cytosol 21.41 81.34
HORVU1Hr1G037870.1 Barley cytosol 9.82 62.5
HORVU0Hr1G019920.1 Barley cytosol 5.89 61.22
AT2G07698.1 Thale cress endoplasmic reticulum 89.78 58.82
HORVU1Hr1G038040.1 Barley cytosol, mitochondrion 20.63 55.26
HORVU3Hr1G059180.3 Barley mitochondrion 8.06 52.56
HORVU6Hr1G038940.1 Barley mitochondrion 9.23 51.65
HORVU4Hr1G045340.3 Barley cytosol 50.1 50.6
AGP50752 Barley cytosol 50.1 50.6
HORVU6Hr1G049170.4 Barley plastid 50.1 50.3
HORVU4Hr1G014050.1 Barley mitochondrion 8.64 46.81
HORVU4Hr1G014040.1 Barley mitochondrion 8.64 46.81
HORVU0Hr1G009770.1 Barley cytosol 8.64 45.83
HORVU3Hr1G080710.1 Barley cytosol 8.84 38.46
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14Gene3D:1.20.150.20MapMan:2.4.6.2.1Gene3D:2.40.30.20Gene3D:3.40.50.300
GO:A0A191TDI3UniProt:A0A191TDI3ProteinID:ANI86426.1ENA:AP017301.1:CDS:445965..447494InterPro:ATP_synth_F1_aInterPro:ATP_synth_F1_asu
InterPro:ATP_synth_asu-like_sfInterPro:ATP_synth_asu_CInterPro:ATP_synth_asu_C_sfInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_a/bsu_ASEnsemblPlants:BAV58156ProteinID:BAV58156ProteinID:BAV58156.1EnsemblPlantsGene:EPlHVUG00000039850GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006139GO:GO:0006754
GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0015986GO:GO:0016020GO:GO:0016787GO:GO:0032559GO:GO:0045261GO:GO:0046034
GO:GO:0046933GO:GO:0099132GO:GO:1902600InterPro:IPR023366InterPro:IPR038376HAMAP:MF_01346
InterPro:P-loop_NTPasePFAM:PF00006PFAM:PF00306PFAM:PF02874PIRSF:PIRSF039088ScanProsite:PS00152
PANTHER:PTHR43089MetaCyc:PWY-7219SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540TIGRFAMs:TIGR00962
UniParc:UPI000008EC37:::::
Description
atp1ATP synthase subunit 1
Coordinates
chrMt:+:445965..447494
Molecular Weight (calculated)
55309.6 Da
IEP (calculated)
5.629
GRAVY (calculated)
-0.107
Length
509 amino acids
Sequence
(BLAST)
001: MEFSPRAAEL TTLLESRMTN FYTNFQVDEI GRVVSVGDGI ARVYGLNEIQ AGEMVEFASG VKGIALNLEN ENVGIVVFGS DTAIKEGDLV KRTGSIVDVP
101: AGKAMLGRVV DALGVPIDGK GALSDHERRR VEVKAPGIIE RKSVHEPMQT GLKAVDSLVP IGRGQRELII GDRQTGKTAI AIDTILNQKQ MNSRGTNESE
201: TLYCVYVAIG QKRSTVAQLV QILSEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSSTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYEPLP IEKQIVVIYA AVNGFCDRMP LDRISQYEKA ILSTINPELQ KSFLEKGGLT NERKMEPDAS
501: LKESTLPYL
Best Arabidopsis Sequence Match ( ATMG01190.1 )
(BLAST)
001: MELSPRAAEL TNLFESRIRN FYANFQVDEI GRVVSVGDGI AQVYGLNEIQ AGEMVLFANG VKGMALNLEN ENVGIVVFGG DTAIKEGDLV KRTGSIVDVP
101: AGKAMLGRVV DAMGVPIDGK GALSDHEQRR VEVKAPGILE RKSVHEPMQT GLKAVDSLVP IGRGQRELLI GGRQTGKTTI AIDTILNQKQ INSRATSESE
201: TMYCVYVAIG QKRSTVGQLI QTLEEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYAPLP IEKQILVIYA AVNGFCDRMP LDRISQYEKA IPNSVKPELL QALKGGLTNE RKMEPDAFLK
501: ERALALI
Arabidopsis Description
ATP1ATP synthase subunit alpha [Source:UniProtKB/TrEMBL;Acc:G1C2Z0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.