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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 18260611
mitochondrion: 23027867
nucleus: 23303719
nucleus: 24133045
extracellular: 25047395
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
msms PMID: 24133045 doi
DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 23303719 doi
Q He, L Chen, Y Xu, W Yu
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
BAV58156 Barley cytosol, plasma membrane 97.64 97.64
TraesCS5A01G019900.1 Wheat cytosol, extracellular, golgi, mitochondrion, nucleus, unclear 97.45 97.45
TraesCS7A01G098300.1 Wheat cytosol 97.05 97.05
TraesCS7B01G456800.1 Wheat cytosol 96.66 96.66
TraesCS2A01G547200.1 Wheat golgi 96.46 96.46
TraesCS6A01G161000.1 Wheat cytosol 95.87 95.87
TraesCS2B01G283000.1 Wheat cytosol 92.73 95.74
TraesCS4D01G137800.1 Wheat cytosol 95.68 95.68
TraesCS5B01G388400.1 Wheat cytosol 90.96 95.46
HORVU1Hr1G051340.1 Barley cytosol 12.18 95.38
HORVU0Hr1G019950.1 Barley mitochondrion 97.64 94.67
TraesCS3B01G364300.1 Wheat cytosol 94.11 94.11
TraesCS3D01G226800.1 Wheat cytosol 92.34 94.0
TraesCS1D01G137400.1 Wheat cytosol, mitochondrion, plastid 64.24 93.97
TraesCS1D01G193600.1 Wheat cytosol 96.46 92.99
VIT_00s0733g00010.t01 Wine grape extracellular 81.34 91.8
CDY45503 Canola cytosol 90.37 90.73
CDY45501 Canola cytosol 90.37 90.73
ATMG01190.1 Thale cress cytosol 90.37 90.73
GSMUA_AchrUn_... Banana plasma membrane 80.94 80.47
AT2G07698.1 Thale cress endoplasmic reticulum 89.78 58.82
CAA33993 Rice plasma membrane, plastid 50.29 50.49
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14Gene3D:1.20.150.20MapMan:2.4.6.2.1Gene3D:2.40.30.20Gene3D:3.40.50.300
EntrezGene:6450183ProteinID:AAZ99349.1InterPro:ATP_synth_F1_aInterPro:ATP_synth_F1_asuInterPro:ATP_synth_asu-like_sfInterPro:ATP_synth_asu_C
InterPro:ATP_synth_asu_C_sfInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_a/bsu_ASEnsemblPlants:BAC19899
EnsemblPlantsGene:BAC19899ProteinID:BAC19899ProteinID:BAC19899.2ProteinID:CAA35787.1ncoils:CoilGO:GO:0000166
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003909GO:GO:0003910
GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0005743GO:GO:0006139GO:GO:0006259GO:GO:0006281
GO:GO:0006310GO:GO:0006754GO:GO:0006810GO:GO:0006811GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015986GO:GO:0016020GO:GO:0016787
GO:GO:0032559GO:GO:0045261GO:GO:0046034GO:GO:0046933GO:GO:0051103GO:GO:0099132
GO:GO:1902600InterPro:IPR023366InterPro:IPR038376HAMAP:MF_01346InterPro:P-loop_NTPaseUniProt:P0C522
PFAM:PF00006PFAM:PF00306PFAM:PF02874PIRSF:PIRSF039088ScanProsite:PS00152PANTHER:PTHR43089
MetaCyc:PWY-7219Reactome:R-HSA-1268020Reactome:R-HSA-163210Reactome:R-HSA-8949613SUPFAM:SSF47917SUPFAM:SSF50615
SUPFAM:SSF52540TIGRFAMs:TIGR00962UniParc:UPI0000006C8EUniParc:UPI00004E56A9RefSeq:YP_002000594.1:
Description
atp1ATP synthase F0 subunit 1
Coordinates
chrMt:+:352379..353908
Molecular Weight (calculated)
55284.5 Da
IEP (calculated)
5.896
GRAVY (calculated)
-0.110
Length
509 amino acids
Sequence
(BLAST)
001: MEFSPRAAEL TTLLESRMTN FYTNFQVDEI GRVVSVGDGI ARVYGLNEIQ AGEMVEFASG VKGIALNLEN ENVGIVVFGS DTAIKEGDLV KRTGSIVDVP
101: AGKAMLGRVV DALGVPIDGK GALSDHERRR VEVKAPGIIE RKSVHEPMQT GLKAVDSLVP IGRGQRELII GDRQTGKTAI AIDTILNQKQ MNSRGTNESE
201: TLYCVYVAIG QKRSTVAQLV QILSEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYEPLP IEKQIVVIYA AVNGFCDRMP LDRISQYEKA ILSTINPELL KSFNEKGGLT NERKIEPDAS
501: LKQTAKEIN
Best Arabidopsis Sequence Match ( ATMG01190.1 )
(BLAST)
001: MELSPRAAEL TNLFESRIRN FYANFQVDEI GRVVSVGDGI AQVYGLNEIQ AGEMVLFANG VKGMALNLEN ENVGIVVFGG DTAIKEGDLV KRTGSIVDVP
101: AGKAMLGRVV DAMGVPIDGK GALSDHEQRR VEVKAPGILE RKSVHEPMQT GLKAVDSLVP IGRGQRELLI GGRQTGKTTI AIDTILNQKQ INSRATSESE
201: TMYCVYVAIG QKRSTVGQLI QTLEEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYAPLP IEKQILVIYA AVNGFCDRMP LDRISQYEKA IPNSVKPELL QALKGGLTNE RKMEPDAFLK
501: ERALALI
Arabidopsis Description
ATP1ATP synthase subunit alpha [Source:UniProtKB/TrEMBL;Acc:G1C2Z0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.