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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 2
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AGP50752 Barley cytosol 99.4 99.4
HORVU4Hr1G045340.3 Barley cytosol 99.21 99.21
HORVU6Hr1G049170.4 Barley plastid 99.4 98.82
TraesCS5D01G459400.1 Wheat cytosol 82.74 98.82
TraesCS7B01G395800.1 Wheat cytosol 83.53 98.36
TraesCS5D01G458900.1 Wheat plastid 98.21 98.21
TraesCS5D01G011000.1 Wheat cytosol 75.2 97.68
TraesCSU01G174100.1 Wheat cytosol 81.94 97.41
CAA33993 Rice plasma membrane, plastid 97.82 97.24
TraesCS1D01G181000.1 Wheat cytosol 96.63 96.63
TraesCS4D01G042900.1 Wheat cytosol 35.91 94.76
TraesCS1D01G070400.1 Wheat cytosol 73.61 92.29
TraesCS5A01G207900.1 Wheat mitochondrion 22.02 49.12
KRH04726 Soybean cytosol 11.71 40.69
Bra040490.1-P Field mustard cytosol 7.54 38.38
Solyc03g033440.1.1 Tomato nucleus, plastid 6.55 30.28
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14MapMan:1.1.9.2.1Gene3D:1.20.150.20Gene3D:2.40.30.20Gene3D:3.40.50.300
InterPro:ATP_synth_F1_aInterPro:ATP_synth_F1_asuInterPro:ATP_synth_asu-like_sfInterPro:ATP_synth_asu_CInterPro:ATP_synth_asu_C_sfInterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_N_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdEnsemblPlantsGene:Bra041120EnsemblPlants:Bra041120.1EnsemblPlants:Bra041120.1-PGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006139GO:GO:0006754
GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0015986GO:GO:0015992GO:GO:0016020GO:GO:0016787GO:GO:0032559GO:GO:0045261
GO:GO:0046034GO:GO:0046933GO:GO:0099132GO:GO:1902600InterPro:IPR023366InterPro:IPR038376
UniProt:M4FJ40HAMAP:MF_01346InterPro:P-loop_NTPasePFAM:PF00006PFAM:PF00306PFAM:PF02874
PANTHER:PTHR42875SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540TIGRFAMs:TIGR00962UniParc:UPI000253ED2D
SEG:seg:::::
Description
ATCG00120 (E=1e-229) ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast.
Coordinates
chrScaffold000625:+:713..2227
Molecular Weight (calculated)
55334.0 Da
IEP (calculated)
6.407
GRAVY (calculated)
-0.064
Length
504 amino acids
Sequence
(BLAST)
001: MATLRVDEIH KILRERIEQY NRKVGIENIG RVVQVGDGIA RIIGLGEIMS GELVEFAEGT RGIALNLESK NVGIVLMGDG LMIQEGSFVK ATGRIAQIPV
101: SEAYLGRVVN ALAKPIDGKG EIIASESRLI ESPAPSIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQKGQ GVICVYVAIG
201: QRASSVAQVV TTFHEEGAME YTIVVAEMAD SPATLQYLAP YTGAALAEYF MYRERHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLNSLLG EGSMTALPIV ETQSGDVSAY IPTNVISISD GQIFLSADLF NAGIRPAIYV GISVSRVGSA AQIKAMKQVA GKSKLELAQF AELQAFAQFA
401: SALDKTSQNQ LARGRRLREL LKQSQANPLP VEEQIATIYT GTRGYLDSLE IEQVNKFLDE LRKHLKDTKP QFQEIISSSK TFTEQAEILL KEAIQEQLER
501: FSLQ
Best Arabidopsis Sequence Match ( ATCG00120.1 )
(BLAST)
001: MVTIRADEIS NIIRERIEQY NREVTIVNTG TVLQVGDGIA RIYGLDEVMA GELVEFEEGT IGIALNLESN NVGVVLMGDG LMIQEGSSVK ATGKIAQIPV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV
Arabidopsis Description
ATPAATP synthase subunit alpha, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.