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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • cytosol 1
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G014040.1 Barley mitochondrion 52.78 60.64
HORVU4Hr1G014050.1 Barley mitochondrion 52.78 60.64
HORVU0Hr1G009770.1 Barley cytosol 47.22 53.12
Solyc04g071300.1.1 Tomato cytosol, nucleus 42.59 46.94
TraesCS1B01G405100.1 Wheat cytosol 75.0 36.16
HORVU0Hr1G019920.1 Barley cytosol 14.81 32.65
Solyc07g027010.1.1 Tomato cytosol 20.37 30.56
Solyc11g039980.1.1 Tomato nucleus, plastid 48.15 30.23
Solyc03g033440.1.1 Tomato nucleus, plastid 29.63 29.36
GSMUA_AchrUn_... Banana cytosol 37.04 28.57
Solyc10g044540.1.1 Tomato plastid 51.85 19.11
Solyc02g012010.1.1 Tomato cytosol 14.81 15.84
Solyc11g051170.1.1 Tomato nucleus 0.93 1.1
Solyc08g045710.1.1 Tomato nucleus 0.0 0.0
TraesCS1B01G405200.1 Wheat cytosol 0.0 0.0
TraesCS5A01G207900.1 Wheat mitochondrion 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc06g072540.1.1EnsemblPlantsGene:Solyc06g072540.1Gene3D:3.40.50.12240InterPro:P-loop_NTPasePANTHER:PTHR42875SUPFAM:SSF52540
UniParc:UPI00027659A1UniProt:K4C8X4MapMan:35.1:::
Description
No Description!
Coordinates
chr6:+:44744219..44744545
Molecular Weight (calculated)
11569.2 Da
IEP (calculated)
6.584
GRAVY (calculated)
0.243
Length
108 amino acids
Sequence
(BLAST)
001: MGDGLLIQEG SCVKATGRIA QIPVSEAYLG RVVNVLAKPI DGRGEISASE FRLIESAAPG IISRCSVYEP LQIRLIAIDS MIPIGRGQRK LIIGDRETDM
101: TISTIISS
Best Arabidopsis Sequence Match ( ATCG00120.1 )
(BLAST)
001: MVTIRADEIS NIIRERIEQY NREVTIVNTG TVLQVGDGIA RIYGLDEVMA GELVEFEEGT IGIALNLESN NVGVVLMGDG LMIQEGSSVK ATGKIAQIPV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV
Arabidopsis Description
ATPAATP synthase subunit alpha, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.