Factsheet for Solyc04g071300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39007	Soybean	cytosol	63.27	52.54
Solyc06g072540.1.1	Tomato	nucleus	46.94	42.59
Solyc07g027010.1.1	Tomato	cytosol	30.61	41.67
Solyc11g039980.1.1	Tomato	nucleus, plastid	45.92	26.16
CDY21186	Canola	cytosol	82.65	26.05
HORVU1Hr1G037870.1	Barley	cytosol	20.41	25.0
Solyc02g012010.1.1	Tomato	cytosol	19.39	18.81
Solyc10g044540.1.1	Tomato	plastid	46.94	15.7
Solyc03g033440.1.1	Tomato	nucleus, plastid	9.18	8.26
Solyc11g051170.1.1	Tomato	nucleus	1.02	1.1
Solyc08g045710.1.1	Tomato	nucleus	0.0	0.0
TraesCS5A01G207900.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc04g071300.1.1	EnsemblPlantsGene:Solyc04g071300.1	Gene3D:2.40.30.20	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015992	GO:GO:0046034	GO:GO:1902600	InterPro:ATP_synth_asu-like_sf
InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:IPR023366	KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	PANTHER:PTHR42875
PFAM:PF02874	SUPFAM:SSF50615	UniParc:UPI000276683C	UniProt:K4BTC2	MapMan:35.1	:

Description

No Description!

Coordinates

chr4:+:58235804..58236223

Molecular Weight (calculated)

10438.6 Da

IEP (calculated)

4.416

GRAVY (calculated)

0.076

Length

98 amino acids

Sequence
(BLAST)

1: MAGELVEYEE GTIGIALNLE SNNVGVVLMG DNLLIQEGSS VKATGRIAQI RVSEAYLGRV INALAKPIAG RECGQRELII GDRQIDKTAV ATDTILNQ

Best Arabidopsis Sequence Match ( ATCG00120.1 )
(BLAST)

001: MVTIRADEIS NIIRERIEQY NREVTIVNTG TVLQVGDGIA RIYGLDEVMA GELVEFEEGT IGIALNLESN NVGVVLMGDG LMIQEGSSVK ATGKIAQIPV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV

Arabidopsis Description

ATPAATP synthase subunit alpha, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.