Factsheet for PGSC0003DMT400057252

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

cytosol: 22313117
extracellular: 22313117
extracellular: 24773703

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035968	Potato	cytosol, mitochondrion, nucleus	19.92	62.35
Solyc08g045710.1.1	Tomato	nucleus	4.89	38.24
TraesCS1D01G193400.1	Wheat	cytosol	30.83	28.28
TraesCS1B01G412900.1	Wheat	cytosol	30.45	28.12
TraesCSU01G147900.1	Wheat	cytosol	30.45	28.12
TraesCS3A01G383800.1	Wheat	cytosol	29.7	27.43
TraesCS1A01G113000.1	Wheat	cytosol	29.32	26.9
PGSC0003DMT400021839	Potato	cytosol	18.42	17.56
TraesCS2D01G492000.1	Wheat	mitochondrion, peroxisome	12.41	14.35

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.20.150.20	Gene3D:3.40.50.300	MapMan:35.1	InterPro:ATP_synth_asu_C
InterPro:ATP_synth_asu_C_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0032559
GO:GO:0045261	GO:GO:0046034	GO:GO:0046933	GO:GO:0099132	InterPro:IPR038376	UniProt:M1C0Q2
InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF00306	EnsemblPlantsGene:PGSC0003DMG401022238	PGSC:PGSC0003DMG401022238	EnsemblPlants:PGSC0003DMT400057252
ScanProsite:PS00152	PANTHER:PTHR43089	PANTHER:PTHR43089:SF2	SUPFAM:SSF47917	SUPFAM:SSF52540	UniParc:UPI000295F8AC

Description

ATP synthase subunit alpha, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG401022238]

Coordinates

chr7:+:56460685..56462559

Molecular Weight (calculated)

29435.4 Da

IEP (calculated)

5.411

GRAVY (calculated)

-0.103

Length

266 amino acids

Sequence
(BLAST)

001: MPVQCLVVQF SNESTRKSFV LVLIHFDDFE FLHPHNFDEE GCECRPPGRE AFPGDVFYLH SRLLERAAKR SDQTGAGSLT ALPVIETQAG DVSAYIPTNV
101: IPITDGQICL ETELFYRGIR PAINVGLSVS RVGSAAQLKT MKQVCGSSKL ELAQYREVAA LAQFGSDLDA ATQALLNRGA RLTEVPKQPQ YAPLPIEKQI
201: LVIYAAVNGF CDRMPLDRIS QYERAIPNSV KPELLQSFLE KGGLTNERKM EPDTFLKESA LAFISI

Best Arabidopsis Sequence Match ( ATMG01190.1 )
(BLAST)

001: MELSPRAAEL TNLFESRIRN FYANFQVDEI GRVVSVGDGI AQVYGLNEIQ AGEMVLFANG VKGMALNLEN ENVGIVVFGG DTAIKEGDLV KRTGSIVDVP
101: AGKAMLGRVV DAMGVPIDGK GALSDHEQRR VEVKAPGILE RKSVHEPMQT GLKAVDSLVP IGRGQRELLI GGRQTGKTTI AIDTILNQKQ INSRATSESE
201: TMYCVYVAIG QKRSTVGQLI QTLEEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYAPLP IEKQILVIYA AVNGFCDRMP LDRISQYEKA IPNSVKPELL QALKGGLTNE RKMEPDAFLK
501: ERALALI

Arabidopsis Description

ATP1ATP synthase subunit alpha [Source:UniProtKB/TrEMBL;Acc:G1C2Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.