Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G038940.1 | Barley | mitochondrion | 17.2 | 52.75 |
| VIT_17s0053g00440.t01 | Wine grape | cytosol | 13.62 | 35.51 |
| CDY22714 | Canola | mitochondrion, plastid | 12.9 | 19.46 |
| PGSC0003DMT400057252 | Potato | extracellular | 17.56 | 18.42 |
| KRH57912 | Soybean | nucleus | 16.49 | 16.73 |
| PGSC0003DMT400035968 | Potato | cytosol, mitochondrion, nucleus | 1.08 | 3.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021839 | EnsemblPlantsGene:PGSC0003DMG400008476 | Gene3D:1.20.150.20 | GO:GO:0006139 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015986 | InterPro:ATP_synth_asu_C | InterPro:ATP_synth_asu_C_sf |
| InterPro:IPR038376 | KEGG:00190+3.6.3.14 | KEGG:00195+3.6.3.14 | PANTHER:PTHR42875 | PFAM:PF00306 | PGSC:PGSC0003DMG400008476 |
| SEG:seg | SUPFAM:SSF47917 | UniParc:UPI000294B751 | UniProt:M1AFS2 | MapMan:35.1 | : |
Description
ATP synthase subunit alpha, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400008476]
Coordinates
chr6:+:27355722..27358867
Molecular Weight (calculated)
31519.3 Da
IEP (calculated)
5.372
GRAVY (calculated)
-0.432
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQIYQDYPL SVSAQRLYHM GPYFKELRDD DVSTNEELAE EDSKEESNRE DEKNSHTEYE VESAAQIKAT KQVAGKLKLK LELAQFTESE VFAQFASNID
101: KATQNQLARS QRLRELLKQS QSDPLMVEEQ IMTIYTGTND YLDSLEVGQV LQGLYTGSSP QTIPRIVIVS TVRVGARGLH LVNSIFNFLN LFTGSPLRSP
201: PRSVMGTMTC EAFCGLHLSR LSTLSPQDPN TGSTVRTLPQ TIVRTTTREG VRGLYLVHQY VIFHDFSLVP IHEPFHDQS
101: KATQNQLARS QRLRELLKQS QSDPLMVEEQ IMTIYTGTND YLDSLEVGQV LQGLYTGSSP QTIPRIVIVS TVRVGARGLH LVNSIFNFLN LFTGSPLRSP
201: PRSVMGTMTC EAFCGLHLSR LSTLSPQDPN TGSTVRTLPQ TIVRTTTREG VRGLYLVHQY VIFHDFSLVP IHEPFHDQS
001: MVTIRADEIS NIIRERIEQY NREVTIVNTG TVLQVGDGIA RIYGLDEVMA GELVEFEEGT IGIALNLESN NVGVVLMGDG LMIQEGSSVK ATGKIAQIPV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV
Arabidopsis Description
ATPAATP synthase subunit alpha, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.