Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 28499913 mitochondrion: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU6Hr1G038940.1 | Barley | mitochondrion | 14.18 | 42.86 |
KRH04726 | Soybean | cytosol | 22.55 | 42.76 |
KRH07855 | Soybean | cytosol | 39.64 | 26.98 |
VIT_17s0053g00440.t01 | Wine grape | cytosol | 10.18 | 26.17 |
KRH27381 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 45.82 | 24.71 |
CDY22714 | Canola | mitochondrion, plastid | 11.64 | 17.3 |
PGSC0003DMT400021839 | Potato | cytosol | 16.73 | 16.49 |
KRH39007 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
KEGG:00190+3.6.3.14 | KEGG:00195+3.6.3.14 | Gene3D:1.20.150.20 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A0R0JZ78 |
EMBL:ACUP02003125 | InterPro:ATP_synth_asu_C | InterPro:ATP_synth_asu_C_sf | InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd | InterPro:ATPase_a/bsu_AS | EnsemblPlantsGene:GLYMA_05G092300 |
GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006810 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015986 | InterPro:IPR038376 |
EnsemblPlants:KRH57912 | ProteinID:KRH57912 | ProteinID:KRH57912.1 | InterPro:P-loop_NTPase | PFAM:PF00006 | PFAM:PF00306 |
ScanProsite:PS00152 | PANTHER:PTHR43089 | MetaCyc:PWY-7219 | SUPFAM:SSF47917 | SUPFAM:SSF52540 | SignalP:SignalP-noTM |
UniParc:UPI0006EDA539 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:-:22254588..22256144
Molecular Weight (calculated)
30388.1 Da
IEP (calculated)
8.802
GRAVY (calculated)
0.085
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MFWSDLVSLI VLLATASDPA PLQFLALYSG CAMGEYFHDN GMHALIIYDD LSKQAVAYRQ ISLLLRQPPG REAFPSDVFY LHSHLLERAA KRSDQTGAGS
101: LIALPVIETQ AGDVSAYIPT NVISITDGQL CLETELFYCG IRPAINVGLS VSRVGSAAQL KAMKQAQYRK VAAFAQFGSY LDVATQALLN RGARLTAVLK
201: QPQYSPLPIE KQILVIYAAV NGFCDRMPLD KIPQYERDIL TTIKPELLQS LKGGLTSKRK IELEKFFKKK VELTT
101: LIALPVIETQ AGDVSAYIPT NVISITDGQL CLETELFYCG IRPAINVGLS VSRVGSAAQL KAMKQAQYRK VAAFAQFGSY LDVATQALLN RGARLTAVLK
201: QPQYSPLPIE KQILVIYAAV NGFCDRMPLD KIPQYERDIL TTIKPELLQS LKGGLTSKRK IELEKFFKKK VELTT
001: MELSPRAAEL TNLFESRIRN FYANFQVDEI GRVVSVGDGI AQVYGLNEIQ AGEMVLFANG VKGMALNLEN ENVGIVVFGG DTAIKEGDLV KRTGSIVDVP
101: AGKAMLGRVV DAMGVPIDGK GALSDHEQRR VEVKAPGILE RKSVHEPMQT GLKAVDSLVP IGRGQRELLI GGRQTGKTTI AIDTILNQKQ INSRATSESE
201: TMYCVYVAIG QKRSTVGQLI QTLEEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYAPLP IEKQILVIYA AVNGFCDRMP LDRISQYEKA IPNSVKPELL QALKGGLTNE RKMEPDAFLK
501: ERALALI
101: AGKAMLGRVV DAMGVPIDGK GALSDHEQRR VEVKAPGILE RKSVHEPMQT GLKAVDSLVP IGRGQRELLI GGRQTGKTTI AIDTILNQKQ INSRATSESE
201: TMYCVYVAIG QKRSTVGQLI QTLEEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYAPLP IEKQILVIYA AVNGFCDRMP LDRISQYEKA IPNSVKPELL QALKGGLTNE RKMEPDAFLK
501: ERALALI
Arabidopsis Description
ATP1ATP synthase subunit alpha [Source:UniProtKB/TrEMBL;Acc:G1C2Z0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.