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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 6
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU6Hr1G038940.1 Barley mitochondrion 14.18 42.86
KRH04726 Soybean cytosol 22.55 42.76
KRH07855 Soybean cytosol 39.64 26.98
VIT_17s0053g00440.t01 Wine grape cytosol 10.18 26.17
KRH27381 Soybean cytosol, endoplasmic reticulum, plasma membrane 45.82 24.71
CDY22714 Canola mitochondrion, plastid 11.64 17.3
PGSC0003DMT400021839 Potato cytosol 16.73 16.49
KRH39007 Soybean cytosol 0.0 0.0
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14Gene3D:1.20.150.20Gene3D:3.40.50.300MapMan:35.1UniProt:A0A0R0JZ78
EMBL:ACUP02003125InterPro:ATP_synth_asu_CInterPro:ATP_synth_asu_C_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_a/bsu_ASEnsemblPlantsGene:GLYMA_05G092300
GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524GO:GO:0006139GO:GO:0006810
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015986InterPro:IPR038376
EnsemblPlants:KRH57912ProteinID:KRH57912ProteinID:KRH57912.1InterPro:P-loop_NTPasePFAM:PF00006PFAM:PF00306
ScanProsite:PS00152PANTHER:PTHR43089MetaCyc:PWY-7219SUPFAM:SSF47917SUPFAM:SSF52540SignalP:SignalP-noTM
UniParc:UPI0006EDA539SEG:seg::::
Description
hypothetical protein
Coordinates
chr5:-:22254588..22256144
Molecular Weight (calculated)
30388.1 Da
IEP (calculated)
8.802
GRAVY (calculated)
0.085
Length
275 amino acids
Sequence
(BLAST)
001: MFWSDLVSLI VLLATASDPA PLQFLALYSG CAMGEYFHDN GMHALIIYDD LSKQAVAYRQ ISLLLRQPPG REAFPSDVFY LHSHLLERAA KRSDQTGAGS
101: LIALPVIETQ AGDVSAYIPT NVISITDGQL CLETELFYCG IRPAINVGLS VSRVGSAAQL KAMKQAQYRK VAAFAQFGSY LDVATQALLN RGARLTAVLK
201: QPQYSPLPIE KQILVIYAAV NGFCDRMPLD KIPQYERDIL TTIKPELLQS LKGGLTSKRK IELEKFFKKK VELTT
Best Arabidopsis Sequence Match ( ATMG01190.1 )
(BLAST)
001: MELSPRAAEL TNLFESRIRN FYANFQVDEI GRVVSVGDGI AQVYGLNEIQ AGEMVLFANG VKGMALNLEN ENVGIVVFGG DTAIKEGDLV KRTGSIVDVP
101: AGKAMLGRVV DAMGVPIDGK GALSDHEQRR VEVKAPGILE RKSVHEPMQT GLKAVDSLVP IGRGQRELLI GGRQTGKTTI AIDTILNQKQ INSRATSESE
201: TMYCVYVAIG QKRSTVGQLI QTLEEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYAPLP IEKQILVIYA AVNGFCDRMP LDRISQYEKA IPNSVKPELL QALKGGLTNE RKMEPDAFLK
501: ERALALI
Arabidopsis Description
ATP1ATP synthase subunit alpha [Source:UniProtKB/TrEMBL;Acc:G1C2Z0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.