Factsheet for Solyc06g064940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013297	Potato	cytosol	94.31	94.8
Solyc11g051160.1.1	Tomato	extracellular, plastid	72.24	71.14
KRG99105	Soybean	cytosol	16.9	66.22
GSMUA_Achr2P08100_001	Banana	cytosol	43.1	62.97
HORVU3Hr1G082150.1	Barley	cytosol	35.69	60.17
Zm00001d005249_P001	Maize	mitochondrion	27.24	57.04
Zm00001d043169_P001	Maize	cytosol	20.69	56.87
Zm00001d041705_P001	Maize	cytosol, mitochondrion	10.34	56.07
Zm00001d005304_P001	Maize	mitochondrion	26.21	55.88
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	43.79	55.7
GSMUA_Achr7P23220_001	Banana	cytosol	47.76	55.4
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	45.34	53.67
CDY71835	Canola	cytosol	25.17	51.05
CDY58916	Canola	cytosol	12.07	50.72
VIT_18s0041g00430.t01	Wine grape	cytosol	52.76	50.49
GSMUA_Achr6P18780_001	Banana	cytosol	49.83	49.83
KRH44929	Soybean	endoplasmic reticulum	49.31	49.65
GSMUA_Achr3P22170_001	Banana	cytosol	44.83	49.43
KRH23751	Soybean	endoplasmic reticulum	51.55	49.34
Zm00001d012254_P003	Maize	mitochondrion	47.24	49.28
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	43.62	48.65
KXG33790	Sorghum	cytosol	48.97	48.14
CDX96377	Canola	cytosol	45.86	47.84
Zm00001d042664_P001	Maize	plasma membrane	47.07	47.81
GSMUA_Achr5P25970_001	Banana	cytosol	45.69	47.75
Bra016084.1-P	Field mustard	cytosol	45.86	47.67
CDX68279	Canola	cytosol	43.62	47.65
EES10230	Sorghum	cytosol	41.72	47.27
Bra008012.1-P	Field mustard	cytosol	45.52	46.98
AT1G72150.1	Thale cress	cytosol	46.38	46.95
CDY03655	Canola	cytosol	45.69	46.9
TraesCS3A01G385300.1	Wheat	cytosol	46.38	46.54
TraesCS3B01G417500.1	Wheat	golgi	46.38	46.54
Os05t0429400-01	Rice	plasma membrane	46.55	46.15
CDY71842	Canola	cytosol	37.76	45.53
CDX82182	Canola	cytosol	44.83	45.22
TraesCS3D01G378300.1	Wheat	cytosol	45.69	45.14
Os01t0874700-01	Rice	plasma membrane	47.59	45.02
Bra003892.1-P	Field mustard	cytosol	40.52	45.02
Zm00001d038262_P001	Maize	plasma membrane	48.1	45.0
Solyc02g070210.2.1	Tomato	cytosol	36.03	44.37
Solyc09g015080.2.1	Tomato	cytosol, plastid	32.41	44.34
TraesCS1B01G279200.1	Wheat	cytosol	46.38	44.1
TraesCS1D01G268600.1	Wheat	golgi	46.38	44.1
TraesCS1A01G268500.1	Wheat	cytosol	46.21	43.93
OQU78068	Sorghum	cytosol	39.31	43.35
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	46.55	43.2
HORVU3Hr1G082110.2	Barley	plastid	46.03	41.4
Zm00001d010205_P002	Maize	cytosol	38.45	41.37
HORVU1Hr1G075150.4	Barley	plasma membrane	46.9	40.96
AT1G22530.1	Thale cress	cytosol	47.24	40.12
Bra040854.1-P	Field mustard	cytosol	47.24	38.81
CDY21368	Canola	cytosol	43.45	38.65
CDY66581	Canola	cytosol	41.55	38.5
Solyc09g025230.2.1	Tomato	cytosol	25.69	33.11

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	UniProt:K4C7C4
PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF96
SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:Solyc06g064940.2
EnsemblPlants:Solyc06g064940.2.1	UniParc:UPI00027670EE	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:40490888..40493593

Molecular Weight (calculated)

64815.0 Da

IEP (calculated)

4.420

GRAVY (calculated)

-0.618

Length

580 amino acids

Sequence
(BLAST)

001: MAEETKKIAE ETTPEVVVSD VTVRETPQPE PETLPESPEK DAAPVTGESK VEDEKEKELV GESNSFKEES NKVEELPNPE QKALAEFKQM VQEALNKHEF
101: TAPPPPPPAK EEDEKKAAVP AEAPEAEPVT EAAAPATPDP VIETESEPVA EKKVETEKLE KTEEKVTPPE TEATPAPAAE TPSEPSETEK VEAVEEIKET
201: IVEVPAAVAV MASTEEPPAA EAEEPKTEQT PPAAPEEVSI WGIPLLADER SDVILLKFLR ARDFKVKEAF TMLKSVVAWR KEFKIDELLD EKELGQGLEK
301: VVYNHGVDKE GHPVCYNAFG EFQDKELYQN TFADDKEKLT KFLRWRIQFM EKSIRNLDFS PDGINTFVQV LDLKNSPGLF FYKKELRQAT NRALLLLQDN
401: YPEFVAKQVF INVPWWYPAY YRMINASFTT RTKSKFVFAG PSRSADTLFK YIAPEQVPAQ YGGLSKEGEE EFTTAEPATE EIIKPASKHT IEFPVTEKST
501: LVWEARVTGW DVSYGAEFVP SAEGGYTILI EKSRKVGANE SVISTSYKAS EAGKVVITID NQTSKKKKLV YRSKNKISDC

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.