CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016084.1-P	Field mustard	cytosol	98.74	98.39
CDY71842	Canola	cytosol	80.4	92.93
CDY71835	Canola	cytosol	45.86	89.16
CDY58916	Canola	cytosol	21.94	88.41
CDX68279	Canola	cytosol	84.35	88.32
CDY03655	Canola	cytosol	87.77	86.37
CDX82182	Canola	cytosol	87.05	84.17
AT1G72150.1	Thale cress	cytosol	83.81	81.33
GSMUA_Achr2P08100_001	Banana	cytosol	39.21	54.91
CDY21368	Canola	cytosol	63.31	53.99
CDY66581	Canola	cytosol	60.25	53.51
HORVU3Hr1G082150.1	Barley	cytosol	31.3	50.58
Zm00001d041705_P001	Maize	cytosol, mitochondrion	9.71	50.47
KRG99105	Soybean	cytosol	13.31	50.0
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	39.39	48.03
GSMUA_Achr7P23220_001	Banana	cytosol	43.17	48.0
CDX90715	Canola	cytosol	26.62	47.74
Zm00001d005304_P001	Maize	mitochondrion	22.66	46.32
Zm00001d005249_P001	Maize	mitochondrion	23.02	46.21
Solyc11g051160.1.1	Tomato	extracellular, plastid	48.92	46.18
Solyc06g064940.2.1	Tomato	nucleus	47.84	45.86
PGSC0003DMT400013297	Potato	cytosol	47.3	45.58
VIT_18s0041g00430.t01	Wine grape	cytosol	48.56	44.55
GSMUA_Achr6P18780_001	Banana	cytosol	46.04	44.14
Zm00001d012254_P003	Maize	mitochondrion	43.88	43.88
KRH44929	Soybean	endoplasmic reticulum	45.14	43.58
KRH23751	Soybean	endoplasmic reticulum	47.48	43.56
CDY03654	Canola	nucleus	37.95	43.15
CDY50441	Canola	plasma membrane	37.59	43.09
CDX82180	Canola	nucleus	37.77	42.94
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	40.11	42.88
GSMUA_Achr5P25970_001	Banana	cytosol	42.81	42.88
Zm00001d043169_P001	Maize	cytosol	16.19	42.65
GSMUA_Achr3P22170_001	Banana	cytosol	39.75	42.02
KXG33790	Sorghum	cytosol	44.24	41.69
CDX68278	Canola	cytosol	32.73	41.46
Zm00001d042664_P001	Maize	plasma membrane	42.45	41.33
EES10230	Sorghum	cytosol	37.95	41.21
Os05t0429400-01	Rice	plasma membrane	43.35	41.2
TraesCS3B01G417500.1	Wheat	golgi	42.81	41.18
TraesCS3A01G385300.1	Wheat	cytosol	42.63	41.0
Os01t0874700-01	Rice	plasma membrane	44.6	40.46
TraesCS3D01G378300.1	Wheat	cytosol	42.63	40.37
OQU78068	Sorghum	cytosol	36.87	38.97
Zm00001d038262_P001	Maize	plasma membrane	43.35	38.87
TraesCS1B01G279200.1	Wheat	cytosol	42.27	38.52
TraesCS1D01G268600.1	Wheat	golgi	41.91	38.2
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	42.63	37.92
TraesCS1A01G268500.1	Wheat	cytosol	41.37	37.7
CDX78958	Canola	cytosol, plastid	18.7	37.55
CDY29572	Canola	cytosol, plastid	18.7	37.55
CDX73635	Canola	cytosol, plastid	18.7	37.55
CDY13832	Canola	cytosol, plastid	18.7	37.55
Zm00001d010205_P002	Maize	cytosol	36.15	37.29
CDX78026	Canola	cytosol, plastid	27.34	36.89
CDX73705	Canola	cytosol, plastid	27.16	36.65
HORVU3Hr1G082110.2	Barley	plastid	42.45	36.59
CDY02316	Canola	cytosol	27.52	35.5
CDX90637	Canola	cytosol	25.54	35.32
HORVU1Hr1G075150.4	Barley	plasma membrane	42.09	35.24
CDY09549	Canola	nucleus	33.09	34.39
CDY50723	Canola	nucleus	32.37	33.96
CDX77578	Canola	cytosol	32.37	33.83
CDY05051	Canola	nucleus	34.89	27.95
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	25.54	23.83

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078E5K3	EnsemblPlants:CDX96377	ProteinID:CDX96377	ProteinID:CDX96377.1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:GOLD_dom
InterPro:GOLD_dom_sf	EnsemblPlantsGene:GSBRNA2T00102530001	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF96	SMART:SM00516
SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0004EEB597	SEG:seg

Description

BnaA07g29880D

Coordinates

chrLK031894:+:550313..552788

Molecular Weight (calculated)

62111.1 Da

IEP (calculated)

4.521

GRAVY (calculated)

-0.600

Length

556 amino acids

Sequence
(BLAST)

001: MAQEEAQKSA DVVVVSAEKP MTDDKEVTVP APVPEKEVTP PVASDEKVAA EAEAEKAAPV KEEETVVAEK VVVPTPEELE KKALEEFKEL VREALNKREF
101: TAPPPPPVKE EKPEEKKSAE ESKEEDKTDE KKEEEKQEEA VKTEEKPSEP AAAPAETKPE EKEAVPVTTE KATGGEEDGT KTVEAIEESI VSVTPQESAA
201: EETTVVAEAE PVEPEEVSIY GVPLLQDERS DVILLKFLRA RDFKVKEALT MLKNTVQWRK ENKIDELIEA EAGEEASEFE KMVFAHGVDK EGHVVIYSSY
301: GEFQNKELFS DKEKLNKFLN WRIQLQEKCV RALDFSSPDA KSSFVFVSDF RNAPGLGKRA LWQFIRRAVK QFEDNYPEFA TRELFINVPW WYIPYYKTFG
401: SIITSPKTRS KMVLAGPSKS ADTIFKYISP EQVPVKYGGL SKDIPSTNGD TVTEAIVKPA AKYTIELPAS EACTLSWELR VLGADVSYGA QFEPTTEGSY
501: VVIVSKNRKI GLTDEPVITD SFKVGEPGKI VITIDNQTSK KKKVLYRFKT QPKSDI

Best Arabidopsis Sequence Match ( AT1G72150.1 )
(BLAST)

001: MAQEEVQKSA DVAAAPVVKE KPITDKEVTI PTPVAEKEEV AAPVSDEKAV PEKEVTPEKE APAAEAEKSV SVKEEETVVV AEKVVVLTAE EVQKKALEEF
101: KELVREALNK REFTAPVTPV KEEKTEEKKT EEETKEEEKT EEKKEETTTE VKVEEEKPAV PAAEEEKSSE AAPVETKSEE KPEEKAEVTT EKASSAEEDG
201: TKTVEAIEES IVSVSPPESA VAPVVVETVA VAEAEPVEPE EVSIWGVPLL QDERSDVILT KFLRARDFKV KEALTMLKNT VQWRKENKID ELVESGEEVS
301: EFEKMVFAHG VDKEGHVVIY SSYGEFQNKE LFSDKEKLNK FLSWRIQLQE KCVRAIDFSN PEAKSSFVFV SDFRNAPGLG KRALWQFIRR AVKQFEDNYP
401: EFAAKELFIN VPWWYIPYYK TFGSIITSPR TRSKMVLAGP SKSADTIFKY IAPEQVPVKY GGLSKDTPLT EETITEAIVK PAANYTIELP ASEACTLSWE
501: LRVLGADVSY GAQFEPTTEG SYAVIVSKTR KIGSTDEPVI TDSFKVGEPG KIVITIDNQT SKKKKVLYRF KTQ

Arabidopsis Description

PATL1Patellin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.