CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78026	Canola	cytosol, plastid	87.31	85.19
CDX73705	Canola	cytosol, plastid	86.82	84.71
AT3G51670.1	Thale cress	cytosol	85.82	84.35
Bra012843.1-P	Field mustard	cytosol	91.04	82.81
CDX73635	Canola	cytosol, plastid	56.22	81.59
CDX78958	Canola	cytosol, plastid	56.22	81.59
CDY29572	Canola	cytosol, plastid	56.22	81.59
CDY13832	Canola	cytosol, plastid	56.22	81.59
KRH76050	Soybean	cytosol	71.14	67.93
Solyc09g015080.2.1	Tomato	cytosol, plastid	71.64	67.92
PGSC0003DMT400030364	Potato	plastid	71.39	67.37
KRH65546	Soybean	cytosol	70.4	67.22
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	71.89	64.37
KRH00348	Soybean	cytosol	69.4	64.14
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	95.02	64.09
Zm00001d052665_P001	Maize	cytosol	31.59	62.87
Os05t0345175-01	Rice	cytosol	11.44	58.23
GSMUA_Achr2P18920_001	Banana	plastid	60.2	57.35
VIT_01s0137g00470.t01	Wine grape	cytosol	21.64	56.86
GSMUA_Achr5P07450_001	Banana	plastid	55.97	56.82
EES18028	Sorghum	plastid	60.7	56.61
GSMUA_Achr3P09950_001	Banana	plastid	58.46	55.42
GSMUA_Achr9P17890_001	Banana	cytosol	54.23	55.33
TraesCS1D01G202700.1	Wheat	plastid	57.46	54.61
Zm00001d038005_P001	Maize	mitochondrion, plastid	57.96	54.44
TraesCS1B01G213900.1	Wheat	plastid	56.97	54.14
TraesCS1A01G198900.1	Wheat	plastid	56.72	53.9
Os05t0345100-00	Rice	plastid	38.56	49.68
Zm00001d010049_P001	Maize	plastid	60.2	48.21
CDX90715	Canola	cytosol	33.58	43.55
CDY50441	Canola	plasma membrane	43.53	36.08
CDX82180	Canola	nucleus	43.53	35.79
CDY03654	Canola	nucleus	43.53	35.79
CDX68278	Canola	cytosol	38.56	35.31
CDY58916	Canola	cytosol	11.44	33.33
CDY02316	Canola	cytosol	35.57	33.18
CDY50723	Canola	nucleus	41.04	31.13
CDX77578	Canola	cytosol	41.04	31.02
CDY09549	Canola	nucleus	40.8	30.65
CDY71835	Canola	cytosol	20.4	28.67
HORVU1Hr1G051510.3	Barley	plastid	32.84	28.21
CDX68279	Canola	cytosol	34.83	26.37
CDX96377	Canola	cytosol	35.32	25.54
CDY03655	Canola	cytosol	35.82	25.49
CDY05051	Canola	nucleus	42.79	24.78
CDX82182	Canola	cytosol	35.32	24.7
CDY71842	Canola	cytosol	28.11	23.49
CDY21368	Canola	cytosol	33.08	20.4
CDY66581	Canola	cytosol	30.35	19.49

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078DNS8	EnsemblPlants:CDX90637	ProteinID:CDX90637	ProteinID:CDX90637.1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:GOLD_dom	InterPro:GOLD_dom_sf
EnsemblPlantsGene:GSBRNA2T00151283001	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0004EF3FFE	SEG:seg	:

Description

BnaA03g41440D

Coordinates

chrLK031863:-:1283120..1286116

Molecular Weight (calculated)

45423.9 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.426

Length

402 amino acids

Sequence
(BLAST)

001: MDSSLSPTPF DHQNTEPKKT FTTSLTHLRS NHFKEDTYFV SELKPSEAKS LQDLKHKLSS SSFAASSSMW GVPLLGGDDR ADVILLKFLR ARDFKVGDSL
101: RMLEKCLEWR EEFKTEKLTE EDLGFKDLEG RVAYMRGYDK EGHPVCYNAY GVFKEREMYE RVFGDEEKIN KFLRWRVQVL ERGVKLLHFK PGGVNSIIQD
201: NYPEMVATKL LSSTATVTYT EGFCVAIFIN VPWYFSVIYS MFSPFLTHRT KSKFVISKEG NAAETLYKFI RPEDIPVQYG GLSRPTDSQN GPPKPASEFS
301: IKGGEKVNIQ IEGIEGGATI SWDIVVGGWD LEYTAEFVPN AEEGYAIVVE KPRRMKASDE AVCNSFTTGE AGKLSISVDN SLSRKKKVAA YHYTVRKSTT
401: AV

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.