Factsheet for GSMUA_Achr9P17890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P07450_001	Banana	plastid	82.49	82.07
Zm00001d052665_P001	Maize	cytosol	40.86	79.7
GSMUA_Achr3P09950_001	Banana	plastid	82.49	76.65
GSMUA_Achr2P18920_001	Banana	plastid	81.98	76.54
Os05t0345175-01	Rice	cytosol	14.21	70.89
EES18028	Sorghum	plastid	74.37	67.98
Zm00001d038005_P001	Maize	mitochondrion, plastid	72.59	66.82
TraesCS1D01G202700.1	Wheat	plastid	70.81	65.96
TraesCS1A01G198900.1	Wheat	plastid	70.56	65.72
TraesCS1B01G213900.1	Wheat	plastid	70.05	65.25
Solyc09g015080.2.1	Tomato	cytosol, plastid	67.51	62.74
PGSC0003DMT400030364	Potato	plastid	67.51	62.44
KRH65546	Soybean	cytosol	66.24	62.0
KRH76050	Soybean	cytosol	65.74	61.52
VIT_01s0137g00470.t01	Wine grape	cytosol	23.86	61.44
Os05t0345100-00	Rice	plastid	47.72	60.26
CDX78026	Canola	cytosol, plastid	62.69	59.95
Bra036782.1-P	Field mustard	cytosol, plastid	62.69	59.95
KRH00348	Soybean	cytosol	65.74	59.54
CDX73705	Canola	cytosol, plastid	62.18	59.47
AT3G51670.1	Thale cress	cytosol	61.17	58.92
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	67.01	58.8
Zm00001d010049_P001	Maize	plastid	73.35	57.57
CDY29572	Canola	cytosol, plastid	40.1	57.04
CDY13832	Canola	cytosol, plastid	40.1	57.04
CDX78958	Canola	cytosol, plastid	40.1	57.04
CDX73635	Canola	cytosol, plastid	40.1	57.04
CDX90637	Canola	cytosol	55.33	54.23
Bra012843.1-P	Field mustard	cytosol	58.12	51.81
GSMUA_Achr2P08100_001	Banana	cytosol	38.83	38.54
GSMUA_Achr1P05640_001	Banana	cytosol	39.09	37.11
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	54.82	36.24
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	41.12	35.53
GSMUA_Achr7P23220_001	Banana	cytosol	43.15	34.0
HORVU1Hr1G051510.3	Barley	plastid	39.09	32.91
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	41.37	31.35
GSMUA_Achr3P22170_001	Banana	cytosol	41.62	31.18
GSMUA_Achr9P30580_001	Banana	cytosol	41.62	30.15
GSMUA_Achr6P18780_001	Banana	cytosol	42.64	28.97
GSMUA_Achr5P25970_001	Banana	cytosol	39.59	28.11
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	41.88	26.4

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	EnsemblPlantsGene:GSMUA_Achr9G17890_001	EnsemblPlants:GSMUA_Achr9P17890_001	EnsemblPlants:GSMUA_Achr9T17890_001	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	UniProt:M0U196	PFAM:PF00650	PFscan:PS50191	PFscan:PS50866
PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0002953F86	SEG:seg	:	:	:

Description

Patellin-6 [Source:GMGC_GENE;Acc:GSMUA_Achr9G17890_001]

Coordinates

chr9:-:12504757..12506319

Molecular Weight (calculated)

44338.2 Da

IEP (calculated)

7.219

GRAVY (calculated)

-0.263

Length

394 amino acids

Sequence
(BLAST)

001: MESSQATTEP VPSPNPATKR SLLSSLMEAT AGATAAPTAL HVSPSFKEDC YLLSSLKLAE LKALQELQQL LAFLRARDFD AGQAHAMLLR CVEWRREFGA
101: DEVAEEELVG FKELEGVVAY MHGWDRWGHP VCYNACGVFK DKDVYDRVLG DADKLHHFLR WRVQVMERGV RLLQLRPGGI NSIIQVTDLK DMPKRELRAA
201: SQHILSLFQD NYPEMVARKV FINVPWYFTL LYAMISPFLT ERTKSKFVIA RESNVAETLY KFIRPEFVPV QYGGLSRPGD LQNGPPKPAT EFTIKGGERV
301: NLEIDGIEGG ASITWDIAVG GWDVDYGAEY VPSDGGSYTI IVEKTRRVPA TADEPIHNVY TAREVGKMVL SIDNTNSRRR KVAAYRYFVR KPCT

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.