Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr5P21440_001 | |
| GSMUA_Achr8P09400_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72160.1 | GSMUA_Achr11P... | AT3G54220.1 | 19228333 |
| AT1G72160.1 | GSMUA_Achr5P21440_001 | AT3G54220.1 | 19228333 |
| AT1G72160.1 | GSMUA_Achr8P09400_001 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P08100_001 | Banana | cytosol | 58.4 | 73.55 |
| VIT_09s0002g09040.t01 | Wine grape | cytosol | 16.6 | 72.81 |
| HORVU3Hr1G082150.1 | Barley | cytosol | 49.8 | 72.38 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 83.4 | 71.9 |
| GSMUA_Achr9P08580_001 | Banana | cytosol, plasma membrane | 63.2 | 69.3 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 70.8 | 67.3 |
| Zm00001d041705_P001 | Maize | cytosol, mitochondrion | 14.4 | 67.29 |
| Zm00001d005249_P001 | Maize | mitochondrion | 36.8 | 66.43 |
| KRG99105 | Soybean | cytosol | 19.4 | 65.54 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 72.2 | 65.05 |
| Zm00001d043169_P001 | Maize | cytosol | 27.4 | 64.93 |
| Zm00001d005304_P001 | Maize | mitochondrion | 35.0 | 64.34 |
| Bra000675.1-P | Field mustard | cytosol | 37.8 | 60.97 |
| CDX90715 | Canola | cytosol | 37.6 | 60.65 |
| GSMUA_Achr6P07270_001 | Banana | cytosol, nucleus, plastid | 63.0 | 60.58 |
| Zm00001d012254_P003 | Maize | mitochondrion | 64.4 | 57.91 |
| KRH23753 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 48.4 | 57.08 |
| Zm00001d042664_P001 | Maize | plasma membrane | 65.0 | 56.92 |
| TraesCS3B01G417500.1 | Wheat | golgi | 65.4 | 56.57 |
| TraesCS3A01G385300.1 | Wheat | cytosol | 65.4 | 56.57 |
| CDY58916 | Canola | cytosol | 15.6 | 56.52 |
| VIT_07s0031g03220.t01 | Wine grape | cytosol | 58.6 | 56.13 |
| KXG33790 | Sorghum | cytosol | 65.2 | 55.25 |
| TraesCS3D01G378300.1 | Wheat | cytosol | 64.6 | 55.03 |
| EES10230 | Sorghum | cytosol | 56.2 | 54.88 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 68.4 | 54.72 |
| Os01t0874700-01 | Rice | plasma membrane | 66.0 | 53.83 |
| Os05t0429400-01 | Rice | plasma membrane | 62.6 | 53.5 |
| PGSC0003DMT400065886 | Potato | cytosol | 52.4 | 53.36 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 52.2 | 53.27 |
| CDY50441 | Canola | plasma membrane | 51.2 | 52.78 |
| KRH63933 | Soybean | plasma membrane | 58.4 | 52.42 |
| CDX82180 | Canola | nucleus | 51.0 | 52.15 |
| CDY03654 | Canola | nucleus | 51.0 | 52.15 |
| KRH59683 | Soybean | cytosol | 56.2 | 52.13 |
| TraesCS1D01G268600.1 | Wheat | golgi | 63.4 | 51.97 |
| KRH54012 | Soybean | nucleus | 57.8 | 51.89 |
| Bra008013.1-P | Field mustard | nucleus | 51.4 | 51.81 |
| TraesCS1B01G279200.1 | Wheat | cytosol | 63.2 | 51.8 |
| TraesCS1A01G268500.1 | Wheat | cytosol | 62.6 | 51.31 |
| AT1G72160.1 | Thale cress | nucleus | 50.2 | 51.22 |
| Bra003891.1-P | Field mustard | cytosol | 51.2 | 50.79 |
| HORVU3Hr1G082110.2 | Barley | plastid | 65.4 | 50.7 |
| CDX68278 | Canola | cytosol | 44.4 | 50.57 |
| VIT_05s0029g01570.t01 | Wine grape | cytosol | 40.4 | 50.25 |
| Zm00001d038262_P001 | Maize | plasma membrane | 62.0 | 50.0 |
| OQU78068 | Sorghum | cytosol | 51.8 | 49.24 |
| KRH41016 | Soybean | endoplasmic reticulum | 56.6 | 49.22 |
| KRH44929 | Soybean | endoplasmic reticulum | 56.6 | 49.13 |
| VIT_18s0041g00430.t01 | Wine grape | cytosol | 58.4 | 48.18 |
| PGSC0003DMT400013297 | Potato | cytosol | 55.4 | 48.01 |
| Solyc06g064940.2.1 | Tomato | nucleus | 55.4 | 47.76 |
| HORVU1Hr1G075150.4 | Barley | plasma membrane | 63.4 | 47.74 |
| CDY71835 | Canola | cytosol | 27.2 | 47.55 |
| VIT_18s0041g00420.t01 | Wine grape | cytosol | 55.0 | 47.25 |
| KRH23751 | Soybean | endoplasmic reticulum | 57.0 | 47.03 |
| Zm00001d010205_P002 | Maize | cytosol | 49.8 | 46.2 |
| Solyc11g051160.1.1 | Tomato | extracellular, plastid | 54.4 | 46.18 |
| CDX68279 | Canola | cytosol | 46.6 | 43.88 |
| GSMUA_Achr5P07450_001 | Banana | plastid | 34.6 | 43.69 |
| GSMUA_Achr2P18920_001 | Banana | plastid | 36.8 | 43.6 |
| Bra008012.1-P | Field mustard | cytosol | 49.0 | 43.59 |
| Bra016084.1-P | Field mustard | cytosol | 48.4 | 43.37 |
| CDY03655 | Canola | cytosol | 49.0 | 43.36 |
| CDX96377 | Canola | cytosol | 48.0 | 43.17 |
| GSMUA_Achr9P17890_001 | Banana | cytosol | 34.0 | 43.15 |
| AT1G72150.1 | Thale cress | cytosol | 49.2 | 42.93 |
| GSMUA_Achr3P09950_001 | Banana | plastid | 36.4 | 42.92 |
| Bra003892.1-P | Field mustard | cytosol | 44.2 | 42.34 |
| CDX82182 | Canola | cytosol | 48.4 | 42.09 |
| GSMUA_Achr1P05640_001 | Banana | cytosol | 34.2 | 41.2 |
| CDY71842 | Canola | cytosol | 38.8 | 40.33 |
| GSMUA_Achr9P30580_001 | Banana | cytosol | 43.4 | 39.89 |
| AT4G09160.1 | Thale cress | cytosol | 48.0 | 35.93 |
| AT1G22530.1 | Thale cress | cytosol | 48.8 | 35.72 |
| CDY05051 | Canola | nucleus | 48.4 | 34.87 |
| Bra040854.1-P | Field mustard | cytosol | 48.8 | 34.56 |
| CDY21368 | Canola | cytosol | 44.8 | 34.36 |
| CDY66581 | Canola | cytosol | 41.2 | 32.91 |
Protein Annotations
| Gene3D:3.40.525.10 | MapMan:35.1 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf |
| InterPro:GOLD_dom | EnsemblPlantsGene:GSMUA_Achr7G23220_001 | EnsemblPlants:GSMUA_Achr7P23220_001 | EnsemblPlants:GSMUA_Achr7T23220_001 | InterPro:IPR001251 | InterPro:IPR009038 |
| InterPro:IPR036865 | UniProt:M0TK08 | PFAM:PF00650 | PFAM:PF03765 | PRINTS:PR00180 | PFscan:PS50191 |
| PFscan:PS50866 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF143 | SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 |
| SUPFAM:SSF52087 | UniParc:UPI000295A0BD | SEG:seg | : | : | : |
Description
Patellin-3 [Source:GMGC_GENE;Acc:GSMUA_Achr7G23220_001]
Coordinates
chr7:+:25505789..25508295
Molecular Weight (calculated)
55281.7 Da
IEP (calculated)
4.696
GRAVY (calculated)
-0.477
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEAQSKAT EVAPMKVEEA AVTEATPPAP APEPGEEEAE PKKTAEETKP EAEEPGPPAE AIVAPSVSFK EESNVVADLV DPEKKALDEL KQLVQAALAN
101: NEFAPPPPPP PPKPAETDSP APPPDVEPPK PTAEKEEPLP AAAEDDGGKT GEAVEETEVF IWGVPLLGDE RSDTILLKFL RARDFKVKDA LSMLKNAVIW
201: RKQFGIEALL QEDLGLPELE KAVFMHAVDR EGHPVCYNVY GEFQNKELYD KAFGDEEKRQ RFLKWRIQYL EKGIRELLDF TPGGVSSMVQ VTDLKNTPRL
301: GKHRQATRQA VTLLQDNYPE FIAKKVFINV PWWYLAFSRM MSPFFTQRTK SKFVFAGPSK SAETLFKYIA PEQVPVAFGG LSNESDPEFT TADAVTEVTI
401: KASSKQSIEI PATEATLLVW ELRVSGWEVS YGAEFMPSAE DGYTVIVQKT RKLVATDEPV IKTSFKIGEP GKVVLNIENP TSKKKKLLYR SKAKSSAKPT
101: NEFAPPPPPP PPKPAETDSP APPPDVEPPK PTAEKEEPLP AAAEDDGGKT GEAVEETEVF IWGVPLLGDE RSDTILLKFL RARDFKVKDA LSMLKNAVIW
201: RKQFGIEALL QEDLGLPELE KAVFMHAVDR EGHPVCYNVY GEFQNKELYD KAFGDEEKRQ RFLKWRIQYL EKGIRELLDF TPGGVSSMVQ VTDLKNTPRL
301: GKHRQATRQA VTLLQDNYPE FIAKKVFINV PWWYLAFSRM MSPFFTQRTK SKFVFAGPSK SAETLFKYIA PEQVPVAFGG LSNESDPEFT TADAVTEVTI
401: KASSKQSIEI PATEATLLVW ELRVSGWEVS YGAEFMPSAE DGYTVIVQKT RKLVATDEPV IKTSFKIGEP GKVVLNIENP TSKKKKLLYR SKAKSSAKPT
001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
Arabidopsis Description
PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.