Factsheet for VIT_18s0041g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09040.t01	Wine grape	cytosol	19.07	97.37
VIT_05s0029g01570.t01	Wine grape	cytosol	58.59	84.83
Bra000675.1-P	Field mustard	cytosol	37.63	70.65
CDX90715	Canola	cytosol	37.29	70.0
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	48.8	66.98
VIT_07s0031g03220.t01	Wine grape	cytosol	56.87	63.41
HORVU3Hr1G082150.1	Barley	cytosol	37.11	62.79
PGSC0003DMT400065886	Potato	cytosol	52.75	62.53
GSMUA_Achr2P08100_001	Banana	cytosol	42.1	61.71
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	51.89	61.63
Zm00001d041705_P001	Maize	cytosol, mitochondrion	11.0	59.81
AT1G72160.1	Thale cress	nucleus	49.31	58.57
Zm00001d005249_P001	Maize	mitochondrion	27.84	58.48
CDY50441	Canola	plasma membrane	48.63	58.35
CDX82180	Canola	nucleus	48.63	57.87
CDY03654	Canola	nucleus	48.45	57.67
Zm00001d005304_P001	Maize	mitochondrion	26.8	57.35
Zm00001d043169_P001	Maize	cytosol	20.79	57.35
Bra008013.1-P	Field mustard	nucleus	48.8	57.26
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	44.33	56.58
Bra003891.1-P	Field mustard	cytosol	48.97	56.55
GSMUA_Achr7P23220_001	Banana	cytosol	47.25	55.0
CDX68278	Canola	cytosol	41.07	54.44
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	44.33	49.62
GSMUA_Achr3P22170_001	Banana	cytosol	44.16	48.86
VIT_18s0041g00430.t01	Wine grape	cytosol	50.69	48.68
GSMUA_Achr6P18780_001	Banana	cytosol	47.77	47.93
Zm00001d012254_P003	Maize	mitochondrion	44.67	46.76
Zm00001d042664_P001	Maize	plasma membrane	45.88	46.76
VIT_01s0137g00470.t01	Wine grape	cytosol	12.2	46.41
GSMUA_Achr5P25970_001	Banana	cytosol	43.99	46.13
TraesCS3B01G417500.1	Wheat	golgi	45.53	45.85
KXG33790	Sorghum	cytosol	46.39	45.76
EES10230	Sorghum	cytosol	40.21	45.7
TraesCS3A01G385300.1	Wheat	cytosol	45.36	45.67
VIT_10s0003g05480.t01	Wine grape	cytosol	36.94	45.17
TraesCS3D01G378300.1	Wheat	cytosol	45.36	44.97
TraesCS1D01G268600.1	Wheat	golgi	46.05	43.93
TraesCS1B01G279200.1	Wheat	cytosol	45.88	43.77
Os05t0429400-01	Rice	plasma membrane	43.99	43.76
TraesCS1A01G268500.1	Wheat	cytosol	45.7	43.61
Os01t0874700-01	Rice	plasma membrane	45.53	43.23
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	32.99	42.76
Zm00001d038262_P001	Maize	plasma membrane	45.19	42.42
OQU78068	Sorghum	cytosol	37.97	42.02
VIT_07s0005g03430.t01	Wine grape	cytosol	31.62	40.98
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	43.99	40.96
HORVU3Hr1G082110.2	Barley	plastid	45.02	40.62
AT4G09160.1	Thale cress	cytosol	45.19	39.37
HORVU1Hr1G075150.4	Barley	plasma membrane	44.5	39.01
CDY05051	Canola	nucleus	46.22	38.76
Zm00001d010205_P002	Maize	cytosol	35.22	38.03
VIT_19s0085g00280.t01	Wine grape	cytosol	35.4	36.52

Protein Annotations

EntrezGene:100247827	wikigene:100247827	Gene3D:3.40.525.10	MapMan:35.1	EMBL:AM434142	ProteinID:CAN80423
ProteinID:CAN80423.1	ProteinID:CCB61731	ProteinID:CCB61731.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	UniProt:F6I408	EMBL:FN596744	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR001251	InterPro:IPR036865	EntrezGene:LOC100247827	wikigene:LOC100247827	PFAM:PF00650
PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516
SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	TMHMM:TMhelix	UniParc:UPI000210A87D	ArrayExpress:VIT_18s0041g00420
EnsemblPlantsGene:VIT_18s0041g00420	EnsemblPlants:VIT_18s0041g00420.t01	RefSeq:XP_002265124	RefSeq:XP_002265124.2	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:24871446..24874057

Molecular Weight (calculated)

66103.5 Da

IEP (calculated)

4.742

GRAVY (calculated)

-0.258

Length

582 amino acids

Sequence
(BLAST)

001: MADETDAAPP PTLLAAASVV PPETAAPPET AASEEVLTVL DVAPPVTEKE VSPQKPPPPP EEVVAVVDSE KKVPQNLVSF KEESNRLADL SESERRALEE
101: LKQSVQEALR NGIFTSQPQP PPPPPPPQSA EKPPEKIEEA SEKREPNPVA ESEISTQEES AKDENVKPTP NPTIESILKH ESPTQEDVSI WGIPLLKDER
201: SDMILLKFLR AREFKVKEAF AMLKNTIFWR KEFGIDALVD DDLGEHLEKV VFMHGFDRDG HPVCYNVYGE FQNKELYQKT FSDEEKRMKF LRWRIQFLER
301: SIRKLDFTPG GVNTIFQVND LKNSPGPGKW ELRQATKQAL QLLQDNYPEF VAKQVFINVP WWYLAFYMMI SPFLTQRTKS KFVFASPAKS AKTLFKYISP
401: EQVPIQYGGL SVDYCDCNPD FGIADPVTEI TVKPSTKQTV EILVSEQCVI VWEVRVVGWE VAYGAEFIPD AEDEYTVVVQ KATKMAPTDD PVMCNSFKIK
501: ELGKIVITID NPTSKKKKLL YRFKKILALI LLYVLVLAFP SMYILLLHGW LFIDIMLTLY IYECYTACVE HICCIFTSVW FP

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.