Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0056g00050.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72160.1 | VIT_08s0056g00050.t01 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0137g00470.t01 | Wine grape | cytosol | 44.74 | 33.33 |
| Bra000675.1-P | Field mustard | cytosol | 81.58 | 30.0 |
| CDX90715 | Canola | cytosol | 80.7 | 29.68 |
| VIT_05s0029g01570.t01 | Wine grape | cytosol | 96.49 | 27.36 |
| Zm00001d043169_P001 | Maize | cytosol | 49.12 | 26.54 |
| Zm00001d005304_P001 | Maize | mitochondrion | 52.63 | 22.06 |
| KRH23753 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 81.58 | 21.93 |
| HORVU3Hr1G082150.1 | Barley | cytosol | 64.91 | 21.51 |
| Zm00001d005249_P001 | Maize | mitochondrion | 51.75 | 21.3 |
| GSMUA_Achr2P08100_001 | Banana | cytosol | 73.68 | 21.16 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 87.72 | 20.41 |
| PGSC0003DMT400065886 | Potato | cytosol | 87.72 | 20.37 |
| VIT_07s0031g03220.t01 | Wine grape | cytosol | 90.35 | 19.73 |
| CDY50441 | Canola | plasma membrane | 81.58 | 19.18 |
| VIT_18s0041g00420.t01 | Wine grape | cytosol | 97.37 | 19.07 |
| CDX82180 | Canola | nucleus | 81.58 | 19.02 |
| CDY03654 | Canola | nucleus | 81.58 | 19.02 |
| AT1G72160.1 | Thale cress | nucleus | 81.58 | 18.98 |
| Bra008013.1-P | Field mustard | nucleus | 81.58 | 18.75 |
| GSMUA_Achr9P08580_001 | Banana | cytosol, plasma membrane | 74.56 | 18.64 |
| Bra003891.1-P | Field mustard | cytosol | 80.7 | 18.25 |
| GSMUA_Achr7P23220_001 | Banana | cytosol | 72.81 | 16.6 |
| VIT_10s0003g05480.t01 | Wine grape | cytosol | 66.67 | 15.97 |
| VIT_18s0041g00430.t01 | Wine grape | cytosol | 81.58 | 15.35 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 69.3 | 15.02 |
| OQU78068 | Sorghum | cytosol | 68.42 | 14.83 |
| GSMUA_Achr6P07270_001 | Banana | cytosol, nucleus, plastid | 67.54 | 14.81 |
| VIT_08s0058g00640.t01 | Wine grape | cytosol, mitochondrion, nucleus | 57.89 | 14.7 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 74.56 | 14.66 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 71.05 | 14.59 |
| AT4G09160.1 | Thale cress | cytosol | 83.33 | 14.22 |
| EES10230 | Sorghum | cytosol | 63.16 | 14.06 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 73.68 | 13.44 |
| VIT_07s0005g03430.t01 | Wine grape | cytosol | 52.63 | 13.36 |
| CDY05051 | Canola | nucleus | 80.7 | 13.26 |
| Zm00001d012254_P003 | Maize | mitochondrion | 64.04 | 13.13 |
| TraesCS3A01G385300.1 | Wheat | cytosol | 64.91 | 12.8 |
| TraesCS3B01G417500.1 | Wheat | golgi | 64.91 | 12.8 |
| Zm00001d042664_P001 | Maize | plasma membrane | 64.04 | 12.78 |
| VIT_19s0085g00280.t01 | Wine grape | cytosol | 63.16 | 12.77 |
| TraesCS3D01G378300.1 | Wheat | cytosol | 64.91 | 12.61 |
| Os05t0429400-01 | Rice | plasma membrane | 64.04 | 12.48 |
| Zm00001d038262_P001 | Maize | plasma membrane | 67.54 | 12.42 |
| KXG33790 | Sorghum | cytosol | 64.04 | 12.37 |
| TraesCS1A01G268500.1 | Wheat | cytosol | 65.79 | 12.3 |
| TraesCS1B01G279200.1 | Wheat | cytosol | 64.91 | 12.13 |
| TraesCS1D01G268600.1 | Wheat | golgi | 64.91 | 12.13 |
| Os01t0874700-01 | Rice | plasma membrane | 64.91 | 12.07 |
| CDX68278 | Canola | cytosol | 44.74 | 11.62 |
| HORVU3Hr1G082110.2 | Barley | plastid | 64.91 | 11.47 |
| HORVU1Hr1G075150.4 | Barley | plasma membrane | 64.91 | 11.14 |
| Zm00001d010205_P002 | Maize | cytosol | 38.6 | 8.16 |
| Zm00001d041705_P001 | Maize | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_09s0002g09040 | EMBL:FN596494 | EnsemblPlants:VIT_09s0002g09040.t01 | EnsemblPlantsGene:VIT_09s0002g09040 | Gene3D:3.40.525.10 | InterPro:CRAL-TRIO_dom |
| InterPro:CRAL-TRIO_dom_sf | InterPro:IPR001251 | InterPro:IPR036865 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF48 | PFAM:PF00650 |
| PFscan:PS50191 | ProteinID:CCB59714 | ProteinID:CCB59714.1 | SUPFAM:SSF52087 | UniParc:UPI000210A23B | UniProt:F6HXT3 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:10602387..10602749
Molecular Weight (calculated)
13650.3 Da
IEP (calculated)
9.004
GRAVY (calculated)
-0.596
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MHGFDKDGHP VCYNVYGEFH NKELYQKTFS DEEKRMKFLR WRIQFLEMSI RKLDFTPGGV NTIFQVNDLK NSPGPGKWEL RQATKQALQL LQDNYPEFVA
101: KQVFINVPWW YLAF
101: KQVFINVPWW YLAF
001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
Arabidopsis Description
PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.