Factsheet for VIT_05s0029g01570.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09040.t01	Wine grape	cytosol	27.36	96.49
VIT_18s0041g00420.t01	Wine grape	cytosol	84.83	58.59
Bra000675.1-P	Field mustard	cytosol	40.8	52.9
CDX90715	Canola	cytosol	40.8	52.9
HORVU3Hr1G082150.1	Barley	cytosol	43.53	50.87
GSMUA_Achr2P08100_001	Banana	cytosol	49.25	49.87
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	51.74	49.06
Zm00001d005249_P001	Maize	mitochondrion	32.84	47.65
VIT_07s0031g03220.t01	Wine grape	cytosol	61.19	47.13
Zm00001d043169_P001	Maize	cytosol	24.38	46.45
Zm00001d005304_P001	Maize	mitochondrion	31.34	46.32
VIT_01s0137g00470.t01	Wine grape	cytosol	17.41	45.75
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	52.24	42.86
PGSC0003DMT400065886	Potato	cytosol	52.24	42.77
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	48.01	42.32
AT1G72160.1	Thale cress	nucleus	50.75	41.63
CDY50441	Canola	plasma membrane	49.75	41.24
CDX82180	Canola	nucleus	50.0	41.1
CDY03654	Canola	nucleus	50.0	41.1
Bra008013.1-P	Field mustard	nucleus	50.25	40.73
GSMUA_Achr7P23220_001	Banana	cytosol	50.25	40.4
Bra003891.1-P	Field mustard	cytosol	49.5	39.48
OQU78068	Sorghum	cytosol	46.77	35.74
CDX68278	Canola	cytosol	38.81	35.54
Zm00001d041705_P001	Maize	cytosol, mitochondrion	9.45	35.51
GSMUA_Achr6P18780_001	Banana	cytosol	50.5	35.0
GSMUA_Achr3P22170_001	Banana	cytosol	45.77	34.98
VIT_18s0041g00430.t01	Wine grape	cytosol	52.49	34.82
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	44.53	34.42
EES10230	Sorghum	cytosol	43.53	34.18
GSMUA_Achr5P25970_001	Banana	cytosol	46.52	33.69
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	37.56	33.63
VIT_10s0003g05480.t01	Wine grape	cytosol	39.55	33.4
Zm00001d042664_P001	Maize	plasma membrane	47.01	33.1
Zm00001d012254_P003	Maize	mitochondrion	45.77	33.09
TraesCS3A01G385300.1	Wheat	cytosol	47.51	33.05
TraesCS3B01G417500.1	Wheat	golgi	47.01	32.7
KXG33790	Sorghum	cytosol	47.51	32.37
TraesCS3D01G378300.1	Wheat	cytosol	47.01	32.2
TraesCS1D01G268600.1	Wheat	golgi	48.76	32.13
TraesCS1B01G279200.1	Wheat	cytosol	48.51	31.97
TraesCS1A01G268500.1	Wheat	cytosol	48.51	31.97
Os05t0429400-01	Rice	plasma membrane	46.27	31.79
Zm00001d038262_P001	Maize	plasma membrane	47.76	30.97
Os01t0874700-01	Rice	plasma membrane	46.77	30.67
VIT_07s0005g03430.t01	Wine grape	cytosol	33.33	29.84
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	46.27	29.76
HORVU3Hr1G082110.2	Barley	plastid	47.01	29.3
HORVU1Hr1G075150.4	Barley	plasma membrane	47.26	28.61
AT4G09160.1	Thale cress	cytosol	46.52	27.99
VIT_19s0085g00280.t01	Wine grape	cytosol	39.05	27.84
CDY05051	Canola	nucleus	46.77	27.09
Zm00001d010205_P002	Maize	cytosol	35.57	26.53

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	ProteinID:CCB44254	ProteinID:CCB44254.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	UniProt:F6GWH0	EMBL:FN594958	InterPro:IPR001251
InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PANTHER:PTHR23324
PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000210AC4D
ArrayExpress:VIT_05s0029g01570	EnsemblPlantsGene:VIT_05s0029g01570	EnsemblPlants:VIT_05s0029g01570.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:17883819..17885180

Molecular Weight (calculated)

46202.5 Da

IEP (calculated)

5.941

GRAVY (calculated)

-0.432

Length

402 amino acids

Sequence
(BLAST)

001: MVLSSEITPS SPPLSSPPQS AEKPPEKIEE ASEKREPNPV AESEISTQEE SAKDENVKPT PNPTIESILK HESPTQEDVS IWGIPLLKDE RSDMILLKFL
101: RAREFKVKEA FAMLKKNTIF WRKEFGIDAL VDDDLGEHLE KVVFMHGFDR DGHLVCYNVY GEFQNKELYQ KTFSDEEKRM KFLRWRIQFL ERSIRKLDFT
201: PGGVNTIFQV NDLKNSPGPG KWELRQATKQ ALQLLQDNYP EFVAKQVFIN VPWWYLAFYM MISPFLTQRT KNKFVFASSA KSAKTLFKYI SPKQVRVVGW
301: EVAYGAEFIP DAEDEYTVVV QKATKMAPTD DPVMCNSSKI KQLRDDLKDM AFEMNSLMEE LKVVKKESLI EKFVAGLSMD ILQFHTVAPL GDPLLHGLHG
401: HL

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.