Factsheet for VIT_08s0058g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015080.2.1	Tomato	cytosol, plastid	77.95	82.55
KRH76050	Soybean	cytosol	77.06	82.19
PGSC0003DMT400030364	Potato	plastid	77.95	82.16
VIT_01s0137g00470.t01	Wine grape	cytosol	27.84	81.7
KRH65546	Soybean	cytosol	76.17	81.24
Zm00001d052665_P001	Maize	cytosol	35.86	79.7
AT3G51670.1	Thale cress	cytosol	70.82	77.75
Bra036782.1-P	Field mustard	cytosol, plastid	70.6	76.94
CDX78026	Canola	cytosol, plastid	70.6	76.94
CDX73705	Canola	cytosol, plastid	70.16	76.46
KRH00348	Soybean	cytosol	72.83	75.17
CDX73635	Canola	cytosol, plastid	46.1	74.73
CDX78958	Canola	cytosol, plastid	46.1	74.73
CDY13832	Canola	cytosol, plastid	46.1	74.73
CDY29572	Canola	cytosol, plastid	46.1	74.73
CDX90637	Canola	cytosol	64.37	71.89
GSMUA_Achr5P07450_001	Banana	plastid	60.58	68.69
GSMUA_Achr2P18920_001	Banana	plastid	63.03	67.06
GSMUA_Achr9P17890_001	Banana	cytosol	58.8	67.01
Bra012843.1-P	Field mustard	cytosol	65.92	66.97
EES18028	Sorghum	plastid	63.25	65.89
GSMUA_Achr3P09950_001	Banana	plastid	61.92	65.57
Zm00001d038005_P001	Maize	mitochondrion, plastid	61.47	64.49
TraesCS1D01G202700.1	Wheat	plastid	59.47	63.12
TraesCS1B01G213900.1	Wheat	plastid	59.24	62.88
TraesCS1A01G198900.1	Wheat	plastid	58.8	62.41
Os05t0345100-00	Rice	plastid	42.32	60.9
Os05t0345175-01	Rice	cytosol	10.69	60.76
VIT_09s0002g09040.t01	Wine grape	cytosol	14.7	57.89
Zm00001d010049_P001	Maize	plastid	62.58	55.98
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	67.48	50.84
VIT_10s0003g05480.t01	Wine grape	cytosol	42.54	40.13
VIT_07s0005g03430.t01	Wine grape	cytosol	38.08	38.08
VIT_05s0029g01570.t01	Wine grape	cytosol	33.63	37.56
VIT_07s0031g03220.t01	Wine grape	cytosol	42.98	36.97
VIT_18s0041g00420.t01	Wine grape	cytosol	42.76	32.99
VIT_19s0085g00280.t01	Wine grape	cytosol	40.76	32.45
VIT_18s0041g00430.t01	Wine grape	cytosol	42.09	31.19
HORVU1Hr1G051510.3	Barley	plastid	32.29	30.98

Protein Annotations

EntrezGene:100246625	wikigene:100246625	Gene3D:3.40.525.10	MapMan:35.1	ProteinID:CCB44808	ProteinID:CCB44808.1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	UniProt:F6GXS8	EMBL:FN594967
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	EntrezGene:LOC100246625	wikigene:LOC100246625	PFAM:PF00650	PFAM:PF03765
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	TIGR:TC61622	UniParc:UPI000210A62C	ArrayExpress:VIT_08s0058g00640
EnsemblPlantsGene:VIT_08s0058g00640	EnsemblPlants:VIT_08s0058g00640.t01	unigene:Vvi.13535	RefSeq:XP_002264479	RefSeq:XP_002264479.1	:

Description

No Description!

Coordinates

chr8:+:9740173..9742621

Molecular Weight (calculated)

51160.5 Da

IEP (calculated)

9.347

GRAVY (calculated)

-0.402

Length

449 amino acids

Sequence
(BLAST)

001: MRANLVLGVE LGKPLLASEN RKQCFLPHKN PFMEASSPIS MQQTPQKDQP EASPKPFRKR FVTSLMEAAT LRSPSFKEDT YFVSRLKSSE KKALQEFKDK
101: LVASHGSDSM WGIPLLGGDE RADVILLKFL RARDFRVADS FNMLEKCLAW RKEFGADDVA EEDLGFKELE GVVAYMHGYD REEHPVCYNA YGVFRDKDMY
201: ERIFGDEEKL KKFLRWRVQV LERGIKLLHF KPGGVNSIIQ VTDLKDMPKR ELRVASNQIL SLFQDNYPEM VARKIFINVP WYFSILYSMF SPFLTQRTKS
301: KFVISKEGNV AETLYKFIRP EDVPVQYGGL SRPSDLQNGP PKPASEFTVK GGEKVNIQIE GIEAGATITW DIVVGGWDLE YSAEFVPNAE GSYTIAVEKP
401: RKMAPSEEAV HNSFMSREAG RLVLSVDNTA SRRKKVAAYR YVVRKSTVV

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.