Factsheet for GSMUA_Achr2P18920_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P07450_001	Banana	plastid	79.86	85.1
GSMUA_Achr9P17890_001	Banana	cytosol	76.54	81.98
Zm00001d052665_P001	Maize	cytosol	38.86	81.19
GSMUA_Achr3P09950_001	Banana	plastid	79.15	78.77
EES18028	Sorghum	plastid	73.46	71.93
Zm00001d038005_P001	Maize	mitochondrion, plastid	71.8	70.79
TraesCS1B01G213900.1	Wheat	plastid	69.67	69.5
TraesCS1D01G202700.1	Wheat	plastid	69.67	69.5
TraesCS1A01G198900.1	Wheat	plastid	69.43	69.27
Os05t0345100-00	Rice	plastid	49.76	67.31
Solyc09g015080.2.1	Tomato	cytosol, plastid	67.06	66.75
PGSC0003DMT400030364	Potato	plastid	67.06	66.43
KRH65546	Soybean	cytosol	65.88	66.03
Os05t0345175-01	Rice	cytosol	12.32	65.82
KRH76050	Soybean	cytosol	65.4	65.56
CDX78026	Canola	cytosol, plastid	63.74	65.29
Bra036782.1-P	Field mustard	cytosol, plastid	63.74	65.29
CDX73705	Canola	cytosol, plastid	63.27	64.81
CDY29572	Canola	cytosol, plastid	42.18	64.26
CDY13832	Canola	cytosol, plastid	42.18	64.26
CDX78958	Canola	cytosol, plastid	42.18	64.26
CDX73635	Canola	cytosol, plastid	42.18	64.26
AT3G51670.1	Thale cress	cytosol	61.85	63.81
KRH00348	Soybean	cytosol	65.64	63.68
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	67.06	63.03
VIT_01s0137g00470.t01	Wine grape	cytosol	22.51	62.09
Zm00001d010049_P001	Maize	plastid	72.99	61.35
CDX90637	Canola	cytosol	57.35	60.2
Bra012843.1-P	Field mustard	cytosol	60.19	57.47
GSMUA_Achr2P08100_001	Banana	cytosol	40.28	42.82
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	57.35	40.6
GSMUA_Achr1P05640_001	Banana	cytosol	39.57	40.24
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	43.13	39.91
GSMUA_Achr7P23220_001	Banana	cytosol	43.6	36.8
GSMUA_Achr3P22170_001	Banana	cytosol	42.65	34.22
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	41.71	33.85
GSMUA_Achr9P30580_001	Banana	cytosol	43.6	33.82
HORVU1Hr1G051510.3	Barley	plastid	36.97	33.33
GSMUA_Achr6P18780_001	Banana	cytosol	43.13	31.38
GSMUA_Achr5P25970_001	Banana	cytosol	40.28	30.63
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	41.71	28.16

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	EnsemblPlantsGene:GSMUA_Achr2G18920_001	EnsemblPlants:GSMUA_Achr2P18920_001	EnsemblPlants:GSMUA_Achr2T18920_001	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	UniProt:M0S983	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000294D9CD	SEG:seg	:

Description

Patellin-6 [Source:GMGC_GENE;Acc:GSMUA_Achr2G18920_001]

Coordinates

chr2:-:19140322..19146766

Molecular Weight (calculated)

46947.6 Da

IEP (calculated)

8.773

GRAVY (calculated)

-0.231

Length

422 amino acids

Sequence
(BLAST)

001: MVSLLKLMEP CQATAEAVAS PKPATKRNLL SSLMEAAAGL QRSSSFKEDS YLASSLKPAE KKALQELKQL LSTSPKPISM WGVPIAPAAA DERADVVLLK
101: FLRARDFDVG EAHAMLLRCA EWRREFGADG VAEEEMVGLK EVEGVVAYMH GWDRRGHPVC YNAYGVFKDA AVYERVLGDA DKLQRFLRWR VQVMERGVRL
201: LHLRPGGVNS IIQVTDLKDM PKRELRAASN HILSLFQDNY PEMVARKVFI NVPWYFSVLY AMISPFLTER TKSKFVIARE GNVAETLHKF IRPEFVPVQY
301: GGLSRPGDLQ NGPPKPATEF AIKGGEQVNL EIDGIEGGAT IAWDVAVGGW DVDYGAEFVP SDEGSYTVVV QKTRRIPAGA EEAVHDAFTT KEAGKMVLSI
401: DNTNSRRRKV AAYRYCVRKP PM

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.