Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036782.1-P | Field mustard | cytosol, plastid | 91.93 | 91.26 |
| CDX78026 | Canola | cytosol, plastid | 91.93 | 91.26 |
| CDX73705 | Canola | cytosol, plastid | 91.69 | 91.02 |
| CDY29572 | Canola | cytosol, plastid | 60.88 | 89.89 |
| CDX73635 | Canola | cytosol, plastid | 60.88 | 89.89 |
| CDX78958 | Canola | cytosol, plastid | 60.88 | 89.89 |
| CDY13832 | Canola | cytosol, plastid | 60.88 | 89.89 |
| CDX90637 | Canola | cytosol | 84.35 | 85.82 |
| Bra012843.1-P | Field mustard | cytosol | 85.82 | 79.41 |
| Solyc09g015080.2.1 | Tomato | cytosol, plastid | 78.73 | 75.94 |
| PGSC0003DMT400030364 | Potato | plastid | 78.48 | 75.35 |
| KRH76050 | Soybean | cytosol | 76.53 | 74.35 |
| KRH65546 | Soybean | cytosol | 76.04 | 73.87 |
| Zm00001d052665_P001 | Maize | cytosol | 36.19 | 73.27 |
| VIT_08s0058g00640.t01 | Wine grape | cytosol, mitochondrion, nucleus | 77.75 | 70.82 |
| VIT_01s0137g00470.t01 | Wine grape | cytosol | 26.41 | 70.59 |
| KRH00348 | Soybean | cytosol | 73.84 | 69.43 |
| GSMUA_Achr5P07450_001 | Banana | plastid | 60.15 | 62.12 |
| GSMUA_Achr2P18920_001 | Banana | plastid | 63.81 | 61.85 |
| EES18028 | Sorghum | plastid | 64.55 | 61.25 |
| GSMUA_Achr9P17890_001 | Banana | cytosol | 58.92 | 61.17 |
| Os05t0345175-01 | Rice | cytosol | 11.74 | 60.76 |
| GSMUA_Achr3P09950_001 | Banana | plastid | 62.84 | 60.61 |
| TraesCS1D01G202700.1 | Wheat | plastid | 61.37 | 59.34 |
| TraesCS1A01G198900.1 | Wheat | plastid | 61.12 | 59.1 |
| Zm00001d038005_P001 | Maize | mitochondrion, plastid | 61.61 | 58.88 |
| TraesCS1B01G213900.1 | Wheat | plastid | 60.88 | 58.87 |
| CDY29036 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 82.64 | 56.71 |
| Os05t0345100-00 | Rice | plastid | 42.05 | 55.13 |
| Zm00001d010049_P001 | Maize | plastid | 64.06 | 52.19 |
| AT1G72160.1 | Thale cress | nucleus | 44.01 | 36.73 |
| AT1G30690.2 | Thale cress | cytosol | 41.32 | 31.3 |
| HORVU1Hr1G051510.3 | Barley | plastid | 33.01 | 28.85 |
| AT4G09160.1 | Thale cress | cytosol | 45.97 | 28.14 |
| AT1G72150.1 | Thale cress | cytosol | 37.41 | 26.7 |
| AT1G22530.1 | Thale cress | cytosol | 38.63 | 23.13 |
Protein Annotations
| Gene3D:3.40.525.10 | MapMan:35.1 | EntrezGene:824330 | UniProt:A0A178VLT0 | ProteinID:AEE78825.1 | EMBL:AF419595 |
| EMBL:AJ238803 | ArrayExpress:AT3G51670 | EnsemblPlantsGene:AT3G51670 | RefSeq:AT3G51670 | TAIR:AT3G51670 | RefSeq:AT3G51670-TAIR-G |
| EnsemblPlants:AT3G51670.1 | TAIR:AT3G51670.1 | EMBL:BT002309 | ProteinID:CAB63153.1 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf |
| InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008289 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0051301 | InterPro:GOLD_dom | InterPro:GOLD_dom_sf | InterPro:IPR001251 |
| InterPro:IPR009038 | InterPro:IPR036865 | RefSeq:NP_190735.1 | ProteinID:OAP06013.1 | PFAM:PF00650 | PFAM:PF03765 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50191 | PFscan:PS50866 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF57 | UniProt:Q9SCU1 |
| SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF101576 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | UniParc:UPI00000AC132 |
| SEG:seg | : | : | : | : | : |
Description
PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
Coordinates
chr3:+:19168672..19171227
Molecular Weight (calculated)
46512.7 Da
IEP (calculated)
8.630
GRAVY (calculated)
-0.450
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.