CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65546	Soybean	cytosol	95.72	95.72
Solyc09g015080.2.1	Tomato	cytosol, plastid	81.95	81.37
PGSC0003DMT400030364	Potato	plastid	81.71	80.75
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	82.19	77.06
KRH00348	Soybean	cytosol	79.57	77.01
Zm00001d052665_P001	Maize	cytosol	36.82	76.73
CDX78026	Canola	cytosol, plastid	75.06	76.7
Bra036782.1-P	Field mustard	cytosol, plastid	75.06	76.7
AT3G51670.1	Thale cress	cytosol	74.35	76.53
CDX73705	Canola	cytosol, plastid	74.58	76.21
CDX78958	Canola	cytosol, plastid	49.17	74.73
CDY13832	Canola	cytosol, plastid	49.17	74.73
CDY29572	Canola	cytosol, plastid	49.17	74.73
CDX73635	Canola	cytosol, plastid	49.17	74.73
VIT_01s0137g00470.t01	Wine grape	cytosol	27.08	74.51
CDX90637	Canola	cytosol	67.93	71.14
GSMUA_Achr5P07450_001	Banana	plastid	62.71	66.67
Bra012843.1-P	Field mustard	cytosol	69.36	66.06
GSMUA_Achr9P17890_001	Banana	cytosol	61.52	65.74
GSMUA_Achr2P18920_001	Banana	plastid	65.56	65.4
GSMUA_Achr3P09950_001	Banana	plastid	64.61	64.15
EES18028	Sorghum	plastid	65.08	63.57
Os05t0345175-01	Rice	cytosol	11.88	63.29
Zm00001d038005_P001	Maize	mitochondrion, plastid	63.42	62.38
TraesCS1D01G202700.1	Wheat	plastid	62.47	62.17
TraesCS1B01G213900.1	Wheat	plastid	62.23	61.94
TraesCS1A01G198900.1	Wheat	plastid	61.76	61.47
Os05t0345100-00	Rice	plastid	42.28	57.05
Zm00001d010049_P001	Maize	plastid	64.61	54.18
KRG99105	Soybean	cytosol	17.34	49.32
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	67.93	47.99
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	41.81	41.51
KRH36854	Soybean	cytosol	45.61	41.11
KRH11846	Soybean	cytosol	44.89	40.65
KRH59683	Soybean	cytosol	43.94	34.32
KRH63933	Soybean	plasma membrane	45.37	34.29
KRH54012	Soybean	nucleus	45.37	34.29
KRH41016	Soybean	endoplasmic reticulum	44.66	32.7
KRH44929	Soybean	endoplasmic reticulum	43.47	31.77
KRH23751	Soybean	endoplasmic reticulum	43.47	30.2
HORVU1Hr1G051510.3	Barley	plastid	33.49	30.13
KRH19560	Soybean	cytosol	33.49	30.0
KRH32187	Soybean	cytosol	33.49	29.87

Protein Annotations

EntrezGene:100809944	Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02000551	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G127500	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	UniProt:I1J7J8
InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	EnsemblPlants:KRH76050	ProteinID:KRH76050	ProteinID:KRH76050.1
PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57
SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002336EA7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:43934128..43937511

Molecular Weight (calculated)

47685.3 Da

IEP (calculated)

9.165

GRAVY (calculated)

-0.432

Length

421 amino acids

Sequence
(BLAST)

001: MDTTSSPMSL QTQKTNFQDL PEASPKPYKK GIVATLMGGA GSFKEDNYFV SLLRSSEKKA LQELKEKLKS SFEDSPSDAS MWGIPLLGGD DKADVILLKF
101: LRARDFRIGD AHHMLLKCLS WRKEFGADTI LEEDLGFNKE LEGVVAYMQG YDKEGHPVCY NAYGVFKDKE MYERVFGDEE KLKKFLRWRV QVLERGIKVL
201: HFKPGGVNSL IQVTDLKDMP KRELRVASNQ ILSLFQDNYP EMVARKIFIN VPWYFSMLYS MFSPFLTQRT KSKFVISKEG NAAETLYKFM RPEDIPVQYG
301: GLNRPSDLQN GPPKPVSEFR IKGGEKVNIQ IEGIEAGATI TWDIVVGGWD LEYSAEFVPN AEGSYTIAVE KPRKMGASEE AIHNSFTSKE SGKMVLSVDN
401: TASRRKKVAA YRYVVRKSST I

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.