CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99105	Soybean	cytosol	20.96	85.81
KRH44929	Soybean	endoplasmic reticulum	77.72	81.77
GSMUA_Achr2P08100_001	Banana	cytosol	43.07	65.74
HORVU3Hr1G082150.1	Barley	cytosol	35.48	62.5
Zm00001d041705_P001	Maize	cytosol, mitochondrion	10.73	60.75
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	41.25	58.96
KRH59683	Soybean	cytosol	51.65	58.07
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	43.56	57.89
Zm00001d043169_P001	Maize	cytosol	20.13	57.82
Zm00001d005249_P001	Maize	mitochondrion	26.4	57.76
KRH54012	Soybean	nucleus	52.64	57.27
VIT_18s0041g00430.t01	Wine grape	cytosol	57.26	57.26
KRH63933	Soybean	plasma membrane	52.48	57.09
GSMUA_Achr7P23220_001	Banana	cytosol	47.03	57.0
Zm00001d005304_P001	Maize	mitochondrion	25.58	56.99
CDY58916	Canola	cytosol	12.87	56.52
Solyc11g051160.1.1	Tomato	extracellular, plastid	53.14	54.67
KRH41016	Soybean	endoplasmic reticulum	51.32	54.09
GSMUA_Achr6P18780_001	Banana	cytosol	50.49	52.76
Solyc06g064940.2.1	Tomato	nucleus	49.34	51.55
Zm00001d012254_P003	Maize	mitochondrion	47.19	51.44
GSMUA_Achr3P22170_001	Banana	cytosol	44.55	51.33
PGSC0003DMT400013297	Potato	cytosol	48.51	50.95
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	42.74	49.81
TraesCS3B01G417500.1	Wheat	golgi	47.36	49.65
Zm00001d042664_P001	Maize	plasma membrane	46.53	49.39
KXG33790	Sorghum	cytosol	48.02	49.32
TraesCS3A01G385300.1	Wheat	cytosol	47.03	49.31
Os01t0874700-01	Rice	plasma membrane	49.17	48.61
TraesCS3D01G378300.1	Wheat	cytosol	46.86	48.38
GSMUA_Achr5P25970_001	Banana	cytosol	44.06	48.11
CDY71835	Canola	cytosol	22.61	47.9
Os05t0429400-01	Rice	plasma membrane	46.2	47.86
EES10230	Sorghum	cytosol	40.43	47.85
CDX68279	Canola	cytosol	41.91	47.83
CDX96377	Canola	cytosol	43.56	47.48
Bra016084.1-P	Field mustard	cytosol	43.56	47.31
OQU78068	Sorghum	cytosol	40.92	47.15
Bra008012.1-P	Field mustard	cytosol	43.56	46.98
KRH11846	Soybean	cytosol	35.81	46.67
CDY03655	Canola	cytosol	43.4	46.55
AT1G72150.1	Thale cress	cytosol	43.89	46.42
CDX82182	Canola	cytosol	43.56	45.91
KRH36854	Soybean	cytosol	35.31	45.82
TraesCS1B01G279200.1	Wheat	cytosol	45.54	45.25
Zm00001d038262_P001	Maize	plasma membrane	46.2	45.16
Bra003892.1-P	Field mustard	cytosol	38.78	45.02
TraesCS1A01G268500.1	Wheat	cytosol	45.05	44.75
TraesCS1D01G268600.1	Wheat	golgi	45.05	44.75
HORVU3Hr1G082110.2	Barley	plastid	47.36	44.5
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	45.54	44.16
CDY71842	Canola	cytosol	34.65	43.66
KRH76050	Soybean	cytosol	30.2	43.47
KRH65546	Soybean	cytosol	29.87	42.99
KRH00348	Soybean	cytosol	30.03	41.84
Zm00001d010205_P002	Maize	cytosol	36.96	41.56
HORVU1Hr1G075150.4	Barley	plasma membrane	44.55	40.66
AT1G22530.1	Thale cress	cytosol	44.06	39.09
Bra040854.1-P	Field mustard	cytosol	44.55	38.24
CDY21368	Canola	cytosol	41.09	38.19
CDY66581	Canola	cytosol	38.45	37.22
KRH19560	Soybean	cytosol	25.74	33.19
KRH32187	Soybean	cytosol	25.25	32.42

Protein Annotations

EntrezGene:100794623	Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02007159	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G001800	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	UniProt:I1LNP0
InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	EnsemblPlants:KRH23751	ProteinID:KRH23751	ProteinID:KRH23751.1
PFAM:PF00650	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF96	SMART:SM00516
SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000233CD29	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:141814..144332

Molecular Weight (calculated)

69563.9 Da

IEP (calculated)

4.544

GRAVY (calculated)

-0.810

Length

606 amino acids

Sequence
(BLAST)

001: MAEEPQKPAS AEEVVAVPAE NPPSEAEAEN IEAEKAQSGV EDKISQSVSF KEETNVVGDL PEAQKKALDE LKKLVQEALN NHELTAPKPE PEKKKPAAEK
101: KEEVEVTEGK KEAEVIEEKK EVEVTEEKKE IEVTEEKKEA EVIEEKKEVE VTEEKKEIEV TEEKKEAEVK EEKKEGEVTE EKKEVEVTEE KKEAEVIVEE
201: KKEVEVTEEK KEVEVTEGKK EVEVIEEKKE TEVTEEKKEV EVEVREEKKE SEVKEEEKGR EVVPEEVEIW GIPLLGDERS DVILLKFLRA RDFKVKEALN
301: MIRNTVRWRK EFGIEGLVEE DLGSDWEKVV FKDGYDKEGH PVYYNVFGEF EDKELYSKTF LDEEKRNKFI RWRIQSLEKS VRSLDFSPNG ISTIVQVNDL
401: KNSPGLGKRE LRQATNQALQ LLQDNYPEFV AKQIFINVPW WYLAFSRMIS PFFTQRTKSK FVFAGPSKSA DTLFRYIAPE LVPVQYGGLS REAEQEFTSA
501: YPVTEFTIKP ATKHSVEFPV SEKSHLVWEI RVVGWDVSYG AEFVPSAEDG YTVIVHKSRK IAPADETVLT NGFKIGEPGK IVLTIDNQTS KKKKLLYRSK
601: TKPIAE

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.