Factsheet for Zm00001d010205_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d052380_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	Zm00001d005029_P001	AT3G54220.1	19228333
AT1G72160.1	Zm00001d052380_P001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041705_P001	Maize	cytosol, mitochondrion	16.33	82.24
Zm00001d005304_P001	Maize	mitochondrion	39.89	79.04
Zm00001d005249_P001	Maize	mitochondrion	39.7	77.26
Zm00001d043169_P001	Maize	cytosol	27.64	70.62
Zm00001d038262_P001	Maize	plasma membrane	76.44	66.45
Os05t0429400-01	Rice	plasma membrane	69.76	64.27
TraesCS1A01G268500.1	Wheat	cytosol	68.83	60.82
TraesCS1D01G268600.1	Wheat	golgi	67.9	60.0
TraesCS1B01G279200.1	Wheat	cytosol	67.9	60.0
Zm00001d012254_P003	Maize	mitochondrion	61.22	59.35
OQU78068	Sorghum	cytosol	56.03	57.41
Zm00001d042664_P001	Maize	plasma membrane	60.67	57.27
HORVU1Hr1G075150.4	Barley	plasma membrane	64.38	52.26
GSMUA_Achr7P23220_001	Banana	cytosol	46.2	49.8
GSMUA_Achr6P18780_001	Banana	cytosol	49.17	45.69
GSMUA_Achr5P25970_001	Banana	cytosol	46.57	45.23
GSMUA_Achr3P22170_001	Banana	cytosol	42.86	43.92
CDY58916	Canola	cytosol	10.95	42.75
Bra000675.1-P	Field mustard	cytosol	24.3	42.26
CDX90715	Canola	cytosol	24.12	41.94
CDX68278	Canola	cytosol	33.95	41.69
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	32.65	41.51
VIT_07s0031g03220.t01	Wine grape	cytosol	40.07	41.38
VIT_18s0041g00430.t01	Wine grape	cytosol	46.2	41.09
KRH59683	Soybean	cytosol	39.89	39.89
CDY50441	Canola	plasma membrane	35.81	39.79
KRH63933	Soybean	plasma membrane	41.0	39.68
KRH54012	Soybean	nucleus	41.0	39.68
CDX82180	Canola	nucleus	35.62	39.26
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	45.45	39.2
CDY03654	Canola	nucleus	35.44	39.06
Solyc11g051160.1.1	Tomato	extracellular, plastid	42.67	39.05
AT1G72160.1	Thale cress	nucleus	35.44	38.98
Bra008013.1-P	Field mustard	nucleus	35.81	38.91
Bra003891.1-P	Field mustard	cytosol	36.36	38.89
PGSC0003DMT400065886	Potato	cytosol	35.25	38.7
VIT_09s0002g09040.t01	Wine grape	cytosol	8.16	38.6
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	35.06	38.57
Solyc06g064940.2.1	Tomato	nucleus	41.37	38.45
KRH41016	Soybean	endoplasmic reticulum	41.0	38.43
PGSC0003DMT400013297	Potato	cytosol	40.63	37.95
KRH23751	Soybean	endoplasmic reticulum	41.56	36.96
KRG99105	Soybean	cytosol	10.02	36.49
Bra016084.1-P	Field mustard	cytosol	37.48	36.2
CDX68279	Canola	cytosol	35.62	36.16
CDX96377	Canola	cytosol	37.29	36.15
KRH44929	Soybean	endoplasmic reticulum	38.4	35.94
Zm00001d052665_P001	Maize	cytosol	13.36	35.64
Bra008012.1-P	Field mustard	cytosol	37.11	35.59
CDY03655	Canola	cytosol	37.29	35.58
VIT_05s0029g01570.t01	Wine grape	cytosol	26.53	35.57
VIT_18s0041g00420.t01	Wine grape	cytosol	38.03	35.22
Bra003892.1-P	Field mustard	cytosol	33.4	34.48
Zm00001d046995_P001	Maize	plasma membrane	33.77	34.4
AT1G72150.1	Thale cress	cytosol	36.36	34.21
CDX82182	Canola	cytosol	35.99	33.74
Zm00001d038005_P001	Maize	mitochondrion, plastid	26.53	33.41
CDY71842	Canola	cytosol	29.68	33.26
CDY71835	Canola	cytosol	16.88	31.82
AT1G22530.1	Thale cress	cytosol	39.52	31.19
Bra040854.1-P	Field mustard	cytosol	39.89	30.45
CDY21368	Canola	cytosol	36.18	29.91
CDY66581	Canola	cytosol	34.32	29.55
Zm00001d010049_P001	Maize	plastid	27.46	29.48
AT4G09160.1	Thale cress	cytosol	33.02	26.65
CDY05051	Canola	nucleus	32.65	25.36

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	ProteinID:AQK93621.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038
InterPro:IPR036865	UniProt:K7V3B1	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866
PANTHER:PTHR23324	PANTHER:PTHR23324:SF143	SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0002209553	EnsemblPlantsGene:Zm00001d010205	EnsemblPlants:Zm00001d010205_P002	EnsemblPlants:Zm00001d010205_T002	SEG:seg

Description

Putative patellin family protein

Coordinates

chr8:+:103948490..103951066

Molecular Weight (calculated)

59308.2 Da

IEP (calculated)

4.538

GRAVY (calculated)

-0.520

Length

539 amino acids

Sequence
(BLAST)

001: MADETKQEVA APAVELVVTE AEKNAEDPAL VAEKKAVEAA EEKAMEAEEN ATEADSEEEK KAEEAAAGDE AAVIDGTGSF KEESNLVSEL PDPERTVLAQ
101: LKELVATTLA NGEFNLPPPP PVKEETKKEE PAKEEAPADK EDEPKAEEAP RSLPKRSSRQ RRRRETKPAE PVLEEKTVVV ADEPAKEELK EEATMEAVVE
201: ETKPAYPVPE EKTVVVAEEE ATKTVEAIEE TAAAASEPEA EAAPSPAAEP KEELIWGVPL VGDDERTDTV LLKFLRAREF KVKEAMAMLK SAVLWRKRLG
301: IDELLGADLG LPDLEKMVFY RGANRKGHPV CYNVTDLKNS PPMLGKHRGV TRQALALLQD NYPEFVAKKV FINVPWWYFA ANKVMSPFLT QRTKSKIVFC
401: SPGRYVAPEQ VPVQFGDLYK EDDTEFSASN AVIKLIVKPS SKETVEVPAT EGSTVVWELR VLGWEVSYDA EFTPDAEGGY TVIVQKTRKV PAHEEPIMKG
501: SFKAAGPGKV VLAVDNRASK KKMLLYRFRV KSTAAEPAT

Best Arabidopsis Sequence Match ( AT1G22530.1 )
(BLAST)

001: MAQEEIQKPT ASVPVVKEET PAPVKEVEVP VTTEKAVAAP APEATEEKVV SEVAVPETEV TAVKEEEVAT GKEILQSESF KEEGYLASEL QEAEKNALAE
101: LKELVREALN KREFTAPPPP PAPVKEEKVE EKKTEETEEK KEEVKTEEKS LEAETKEEEK SAAPATVETK KEEILAAPAP IVAETKKEET PVAPAPVETK
201: PAAPVVAETK KEEILPAAPV TTETKVEEKV VPVETTPAAP VTTETKEEEK AAPVTTETKE EEKAAPGETK KEEKATASTQ VKRASKFIKD IFVSVTTSEK
301: KKEEEKPAVV TIEKAFAADQ EEETKTVEAV EESIVSITLP ETAAYVEPEE VSIWGIPLLE DERSDVILLK FLRARDFKVK EAFTMLKNTV QWRKENKIDD
401: LVSEDLEGSE FEKLVFTHGV DKQGHVVIYS SYGEFQNKEI FSDKEKLSKF LKWRIQFQEK CVRSLDFSPE AKSSFVFVSD FRNAPGLGQR ALWQFIKRAV
501: KQFEDNYPEF VAKELFINVP WWYIPYYKTF GSIITSPRTR SKMVLSGPSK SAETIFKYVA PEVVPVKYGG LSKDSPFTVE DGVTEAVVKS TSKYTIDLPA
601: TEGSTLSWEL RVLGADVSYG AQFEPSNEAS YTVIVSKNRK VGLTDEPVIT DSFKASEAGK VVITIDNQTF KKKKVLYRSK TQA

Arabidopsis Description

PATL2Patellin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.