Factsheet for Zm00001d046995_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88801	Sorghum	cytosol	87.15	88.31
HORVU7Hr1G107070.1	Barley	cytosol	69.0	67.47
Os06t0671800-01	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	45.94	66.94
TraesCS7A01G466800.1	Wheat	cytosol	68.62	65.41
TraesCS7B01G368100.1	Wheat	nucleus	69.57	65.02
TraesCS7D01G454600.1	Wheat	cytosol	69.94	64.69
VIT_10s0003g05480.t01	Wine grape	cytosol	49.72	55.25
KRH36854	Soybean	cytosol	48.39	54.82
KRH11846	Soybean	cytosol	47.64	54.19
Zm00001d041705_P001	Maize	cytosol, mitochondrion	10.78	53.27
GSMUA_Achr9P30580_001	Banana	cytosol	54.44	52.94
Solyc02g070210.2.1	Tomato	cytosol	47.07	52.87
PGSC0003DMT400054383	Potato	cytosol	46.12	51.91
CDY02316	Canola	cytosol	41.02	50.35
Bra023118.1-P	Field mustard	cytosol	45.37	48.88
Zm00001d052665_P001	Maize	cytosol	18.53	48.51
CDX77578	Canola	cytosol	48.2	47.93
Bra026229.1-P	Field mustard	cytosol	48.02	47.74
CDY50723	Canola	nucleus	47.64	47.55
Zm00001d005249_P001	Maize	mitochondrion	24.76	47.29
CDY09549	Canola	nucleus	47.83	47.29
AT1G30690.2	Thale cress	cytosol	46.88	45.93
Zm00001d005304_P001	Maize	mitochondrion	23.44	45.59
Zm00001d043169_P001	Maize	cytosol	17.96	45.02
VIT_19s0085g00280.t01	Wine grape	cytosol	45.56	42.73
Zm00001d038005_P001	Maize	mitochondrion, plastid	34.4	42.52
Zm00001d012254_P003	Maize	mitochondrion	39.32	37.41
Zm00001d042664_P001	Maize	plasma membrane	38.94	36.08
Zm00001d010049_P001	Maize	plastid	33.84	35.66
Zm00001d038262_P001	Maize	plasma membrane	41.02	35.0
Zm00001d010205_P002	Maize	cytosol	34.4	33.77

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	UniProt:A0A1D6P5U2	ProteinID:AQL05305.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0016020	InterPro:IPR001251
InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PANTHER:PTHR23324	PANTHER:PTHR23324:SF139
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000842F12C	EnsemblPlantsGene:Zm00001d046995
EnsemblPlants:Zm00001d046995_P001	EnsemblPlants:Zm00001d046995_T001	SEG:seg	:	:	:

Description

Patellin-5

Coordinates

chr9:+:114408410..114410512

Molecular Weight (calculated)

58626.9 Da

IEP (calculated)

4.816

GRAVY (calculated)

-0.601

Length

529 amino acids

Sequence
(BLAST)

001: MAVEAVSGNG TEAVAAAPAK EVSTKQASFR EESNFLDDLK ESERKALAEL RDKVEAAIVE GKLFDDGKPE VKEKEEAKKK AAEKKDEQPE AEEKGEEDGK
101: KEADAEEEKK EGVEGGEKKE GQEEGEKEEA EEESGDDTKQ EAKKEEAGEK AAAKEPETAA VVVDKDIALW GVPLLPSKGD EATDVVLLKF LRARDFKAGA
201: AFEMLRRTLR WRRDWTGFGS GAECDADADL PEELAGACYL DGADHEGHPV CYNALGVFAD DAVYKKALGT EEGKARFLRW RVRAMERHVA ELDLRPGGVA
301: SLLQVIDLRN SPGPAKKDFR VAVKQVLDLF QDNYPELVAR NILINVPFWY YAFSTLFYPF LTQRTKSKFV VARPSKVTET LLNFLTSIVH LFRRYIPIEA
401: IPVKYGGLKR DGDTEFSADD GEVAEVTVKG SSTETIEIEA TEADATLTWD LTVLGWEVNY KEEFVPADEG SYTIIVRKGK KMASGEEAVR NSFRTGEPGK
501: VVLTVQNTSH RKKKVLFRHK AKSACAKKC

Best Arabidopsis Sequence Match ( AT1G30690.2 )
(BLAST)

001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS

Arabidopsis Description

PATL4Patellin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q94C59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.