CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02316	Canola	cytosol	73.27	90.95
CDX77578	Canola	cytosol	82.06	82.52
CDY50723	Canola	nucleus	78.88	79.62
AT1G30690.2	Thale cress	cytosol	74.39	73.7
VIT_10s0003g05480.t01	Wine grape	cytosol	56.64	63.66
KRH11846	Soybean	cytosol	54.58	62.8
KRH36854	Soybean	cytosol	53.64	61.46
PGSC0003DMT400054383	Potato	cytosol	48.22	54.89
Solyc02g070210.2.1	Tomato	cytosol	48.04	54.56
GSMUA_Achr9P30580_001	Banana	cytosol	51.78	50.92
EER88801	Sorghum	cytosol	47.29	48.47
Zm00001d046995_P001	Maize	plasma membrane	47.29	47.83
CDX90715	Canola	cytosol	27.29	47.1
HORVU7Hr1G107070.1	Barley	cytosol	44.67	44.18
CDY29572	Canola	cytosol, plastid	22.8	44.04
CDY13832	Canola	cytosol, plastid	22.8	44.04
CDX78958	Canola	cytosol, plastid	22.8	44.04
CDX73635	Canola	cytosol, plastid	22.8	44.04
TraesCS7A01G466800.1	Wheat	cytosol	45.23	43.6
CDY58916	Canola	cytosol	11.21	43.48
Os06t0671800-01	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	29.35	43.25
TraesCS7B01G368100.1	Wheat	nucleus	45.61	43.11
CDX78026	Canola	cytosol, plastid	32.9	42.72
TraesCS7D01G454600.1	Wheat	cytosol	45.61	42.66
CDX73705	Canola	cytosol, plastid	32.52	42.23
CDX90637	Canola	cytosol	30.65	40.8
CDY03654	Canola	nucleus	36.26	39.67
CDX82180	Canola	nucleus	36.26	39.67
CDY50441	Canola	plasma membrane	35.7	39.38
CDX68278	Canola	cytosol	30.84	37.59
CDX68279	Canola	cytosol	32.9	33.15
CDX96377	Canola	cytosol	34.39	33.09
CDY03655	Canola	cytosol	34.21	32.39
CDX82182	Canola	cytosol	34.21	31.83
CDY71835	Canola	cytosol	16.45	30.77
CDY71842	Canola	cytosol	26.54	29.52
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	30.84	27.68
CDY05051	Canola	nucleus	34.58	26.66
CDY21368	Canola	cytosol	31.21	25.61
CDY66581	Canola	cytosol	29.16	24.92

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078F985	UniProt:A0A078F985	EnsemblPlants:CDY09549	ProteinID:CDY09549
ProteinID:CDY09549.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
InterPro:GOLD_dom	EnsemblPlantsGene:GSBRNA2T00031151001	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650
PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF139
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0004EE2875	SEG:seg

Description

BnaC05g23700DBnaC05g23700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F985]

Coordinates

chrLK031997:-:397242..399615

Molecular Weight (calculated)

60497.3 Da

IEP (calculated)

4.501

GRAVY (calculated)

-0.561

Length

535 amino acids

Sequence
(BLAST)

001: MTAEVKKEEK QVESEVVIAS VEEEKDEAKP KGVEKISSFK EESDFFSDLK ESEKKALSDL KTKLEEVIIE NTLFKKKKES PVKVEKKKKE PEAAATEEEA
101: KAETSEPAVV AEDSPKEEAK TDADVTQVAK AETIEKESPE EEVKAEAVVE EEVKAENVEE EEKKTEAVVT EEAKAESVEQ EEEDESVDND IELWGVPLLP
201: SKGAEATDVI LLKFLRARDF KVNEAFEMLK KTLKWRKEHK IDSILGEDFW EDLASAAYMN GLDLESRPVC YNIYSVFDNE ELYQRIFGSE QSRENLLRWR
301: FQLMEKGIQK LVLKPGGVTS LLQIHDLKNC PGLFKKELWV AIKNAIVALQ DNYPELVSRN VFINVPFWFY AGSTLLSPFL TQRTKSKFVV TRPAYVTETL
401: LKYISADEIP VQYGGFKGDD DTELFSNEAV SEVVVKPGSS ETIEIPAPES EGTLVWDIVV LGWEVSYKEE FVPTNEGAYT IIVQKGKKIG SNEGPLRNSF
501: KNSESGKIVL TVDNVSSKKK KRVLYRYKTK TESSC

Best Arabidopsis Sequence Match ( AT1G30690.2 )
(BLAST)

001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS

Arabidopsis Description

PATL4Patellin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q94C59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.