Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72160.1 | CDX73496 | AT3G54220.1 | 19228333 |
| AT1G72160.1 | CDX78219 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003891.1-P | Field mustard | cytosol | 96.36 | 83.93 |
| CDY50441 | Canola | plasma membrane | 90.2 | 81.65 |
| CDX82180 | Canola | nucleus | 86.56 | 77.71 |
| CDY03654 | Canola | nucleus | 85.88 | 77.1 |
| AT1G72160.1 | Thale cress | nucleus | 80.18 | 71.84 |
| CDX90715 | Canola | cytosol | 43.51 | 61.61 |
| KRH23753 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 53.08 | 54.95 |
| Zm00001d041705_P001 | Maize | cytosol, mitochondrion | 12.98 | 53.27 |
| PGSC0003DMT400065886 | Potato | cytosol | 58.77 | 52.55 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 58.31 | 52.24 |
| CDY58916 | Canola | cytosol | 16.17 | 51.45 |
| GSMUA_Achr2P08100_001 | Banana | cytosol | 43.96 | 48.61 |
| HORVU3Hr1G082150.1 | Barley | cytosol | 37.59 | 47.97 |
| GSMUA_Achr9P08580_001 | Banana | cytosol, plasma membrane | 49.43 | 47.59 |
| Zm00001d005249_P001 | Maize | mitochondrion | 29.61 | 46.93 |
| VIT_09s0002g09040.t01 | Wine grape | cytosol | 11.62 | 44.74 |
| GSMUA_Achr7P23220_001 | Banana | cytosol | 50.57 | 44.4 |
| Zm00001d005304_P001 | Maize | mitochondrion | 27.33 | 44.12 |
| Zm00001d043169_P001 | Maize | cytosol | 20.5 | 42.65 |
| VIT_18s0041g00420.t01 | Wine grape | cytosol | 54.44 | 41.07 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 47.84 | 39.92 |
| GSMUA_Achr6P07270_001 | Banana | cytosol, nucleus, plastid | 47.15 | 39.81 |
| VIT_05s0029g01570.t01 | Wine grape | cytosol | 35.54 | 38.81 |
| CDX78026 | Canola | cytosol, plastid | 36.22 | 38.59 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 48.75 | 38.56 |
| CDX90637 | Canola | cytosol | 35.31 | 38.56 |
| CDX73705 | Canola | cytosol, plastid | 35.76 | 38.11 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 50.34 | 38.1 |
| CDY05051 | Canola | nucleus | 58.31 | 36.89 |
| Zm00001d012254_P003 | Maize | mitochondrion | 46.47 | 36.69 |
| CDX78958 | Canola | cytosol, plastid | 23.01 | 36.46 |
| CDY29572 | Canola | cytosol, plastid | 23.01 | 36.46 |
| CDY13832 | Canola | cytosol, plastid | 23.01 | 36.46 |
| CDX73635 | Canola | cytosol, plastid | 23.01 | 36.46 |
| Zm00001d042664_P001 | Maize | plasma membrane | 46.47 | 35.73 |
| KXG33790 | Sorghum | cytosol | 46.24 | 34.41 |
| TraesCS3B01G417500.1 | Wheat | golgi | 44.87 | 34.08 |
| Zm00001d010205_P002 | Maize | cytosol | 41.69 | 33.95 |
| TraesCS3A01G385300.1 | Wheat | cytosol | 44.65 | 33.91 |
| Os05t0429400-01 | Rice | plasma membrane | 45.1 | 33.85 |
| EES10230 | Sorghum | cytosol | 39.41 | 33.79 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 48.06 | 33.76 |
| TraesCS3D01G378300.1 | Wheat | cytosol | 45.1 | 33.73 |
| CDX68279 | Canola | cytosol | 40.77 | 33.71 |
| CDY02316 | Canola | cytosol | 33.03 | 33.64 |
| Os01t0874700-01 | Rice | plasma membrane | 46.92 | 33.61 |
| Zm00001d038262_P001 | Maize | plasma membrane | 47.38 | 33.55 |
| TraesCS1B01G279200.1 | Wheat | cytosol | 46.24 | 33.28 |
| CDY71835 | Canola | cytosol | 21.64 | 33.22 |
| TraesCS1A01G268500.1 | Wheat | cytosol | 46.01 | 33.11 |
| TraesCS1D01G268600.1 | Wheat | golgi | 45.79 | 32.95 |
| CDX96377 | Canola | cytosol | 41.46 | 32.73 |
| CDY03655 | Canola | cytosol | 41.46 | 32.21 |
| CDX82182 | Canola | cytosol | 41.69 | 31.83 |
| HORVU1Hr1G075150.4 | Barley | plasma membrane | 47.38 | 31.33 |
| CDY50723 | Canola | nucleus | 37.59 | 31.13 |
| CDX77578 | Canola | cytosol | 37.59 | 31.02 |
| OQU78068 | Sorghum | cytosol | 37.13 | 30.99 |
| HORVU3Hr1G082110.2 | Barley | plastid | 45.33 | 30.85 |
| CDY09549 | Canola | nucleus | 37.59 | 30.84 |
| CDY71842 | Canola | cytosol | 32.57 | 29.73 |
| CDY29036 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 34.85 | 25.67 |
| CDY21368 | Canola | cytosol | 37.59 | 25.31 |
| CDY66581 | Canola | cytosol | 33.49 | 23.48 |
Protein Annotations
| Gene3D:3.40.525.10 | MapMan:35.1 | GO:A0A078BZD2 | EnsemblPlants:CDX68278 | ProteinID:CDX68278 | ProteinID:CDX68278.1 |
| InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | InterPro:GOLD_dom | EnsemblPlantsGene:GSBRNA2T00099559001 |
| InterPro:IPR001251 | InterPro:IPR009038 | InterPro:IPR036865 | PFAM:PF00650 | PFAM:PF03765 | PFscan:PS50191 |
| PFscan:PS50866 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF48 | SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 |
| SUPFAM:SSF52087 | UniParc:UPI0004EEA0A2 | SEG:seg | : | : | : |
Description
BnaA07g23180D
Coordinates
chrLK031787:+:4767057..4769296
Molecular Weight (calculated)
49648.2 Da
IEP (calculated)
4.449
GRAVY (calculated)
-0.544
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MADESITTTL PSPEESKPTL EVSARETETA VTTSTPETQT TAANPEVTET AVTTSTPETE TAAAQLEVTP EEHQQPKVTE TETASTETSQ KEEAAEDETT
101: RIPQNLGSFK EESSNLSDLS DSENKSLNEL KHLVRDALDN HQFDAANAPE EVTIWGVPLL EDDRSDVVLL KFLRARDFKV KDSLTMLKNT IKWRRDFKID
201: ELVDEDLVDD LDKVVFMHGH DREGHPVCYN VYGEFQNKEL YNKTSATKQA VQLLQDNYPE FVFKQAFINV PWWYLVFYTV IGPFMTPRSK SKLVFAGPSR
301: SAETLFKYIS PEQVPVQYGG LSVDPCDCNP DFSLDDPASE VTVKPGTKQT VEIIIYEKCE IVWEIRVIGW EVSYKAEFVP EEKDAYTVVV QKPRKMKPAD
401: EPVLTQSFKV NELGKVLLTV DNPTSKKKKL VYRFNVKPL
101: RIPQNLGSFK EESSNLSDLS DSENKSLNEL KHLVRDALDN HQFDAANAPE EVTIWGVPLL EDDRSDVVLL KFLRARDFKV KDSLTMLKNT IKWRRDFKID
201: ELVDEDLVDD LDKVVFMHGH DREGHPVCYN VYGEFQNKEL YNKTSATKQA VQLLQDNYPE FVFKQAFINV PWWYLVFYTV IGPFMTPRSK SKLVFAGPSR
301: SAETLFKYIS PEQVPVQYGG LSVDPCDCNP DFSLDDPASE VTVKPGTKQT VEIIIYEKCE IVWEIRVIGW EVSYKAEFVP EEKDAYTVVV QKPRKMKPAD
401: EPVLTQSFKV NELGKVLLTV DNPTSKKKKL VYRFNVKPL
001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
Arabidopsis Description
PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.