Factsheet for GSMUA_Achr6P18780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P23220_001	Banana	cytosol	71.9	83.4
GSMUA_Achr2P08100_001	Banana	cytosol	53.45	78.09
VIT_09s0002g09040.t01	Wine grape	cytosol	14.66	74.56
HORVU3Hr1G082150.1	Barley	cytosol	44.14	74.42
GSMUA_Achr5P25970_001	Banana	cytosol	68.45	71.53
GSMUA_Achr3P22170_001	Banana	cytosol	63.97	70.53
KRG99105	Soybean	cytosol	17.93	70.27
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	54.83	69.74
Zm00001d005249_P001	Maize	mitochondrion	32.41	67.87
Zm00001d005304_P001	Maize	mitochondrion	30.69	65.44
Zm00001d041705_P001	Maize	cytosol, mitochondrion	12.07	65.42
Zm00001d043169_P001	Maize	cytosol	23.62	64.93
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	55.86	62.31
Bra000675.1-P	Field mustard	cytosol	33.28	62.26
VIT_07s0031g03220.t01	Wine grape	cytosol	55.69	61.88
CDX90715	Canola	cytosol	32.93	61.61
Zm00001d012254_P003	Maize	mitochondrion	58.79	61.33
Zm00001d042664_P001	Maize	plasma membrane	60.17	61.12
KXG33790	Sorghum	cytosol	61.72	60.68
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	65.34	60.64
TraesCS3A01G385300.1	Wheat	cytosol	59.31	59.52
TraesCS3B01G417500.1	Wheat	golgi	59.31	59.52
EES10230	Sorghum	cytosol	51.38	58.2
Os05t0429400-01	Rice	plasma membrane	58.62	58.12
TraesCS3D01G378300.1	Wheat	cytosol	58.79	58.09
Os01t0874700-01	Rice	plasma membrane	61.03	57.75
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	42.07	57.55
CDY58916	Canola	cytosol	13.62	57.25
KRH59683	Soybean	cytosol	52.41	56.4
TraesCS1D01G268600.1	Wheat	golgi	58.45	55.57
TraesCS1B01G279200.1	Wheat	cytosol	58.45	55.57
KRH63933	Soybean	plasma membrane	52.93	55.12
TraesCS1A01G268500.1	Wheat	cytosol	57.93	55.08
KRH54012	Soybean	nucleus	52.41	54.58
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	45.86	54.29
OQU78068	Sorghum	cytosol	49.14	54.18
VIT_18s0041g00430.t01	Wine grape	cytosol	56.38	53.96
PGSC0003DMT400065886	Potato	cytosol	45.52	53.77
HORVU3Hr1G082110.2	Barley	plastid	59.66	53.64
KRH41016	Soybean	endoplasmic reticulum	52.93	53.39
Zm00001d038262_P001	Maize	plasma membrane	57.07	53.39
CDY50441	Canola	plasma membrane	43.45	51.96
CDX82180	Canola	nucleus	43.79	51.94
CDY03654	Canola	nucleus	43.79	51.94
AT1G72160.1	Thale cress	nucleus	43.79	51.84
Bra008013.1-P	Field mustard	nucleus	44.14	51.61
KRH44929	Soybean	endoplasmic reticulum	50.52	50.87
PGSC0003DMT400013297	Potato	cytosol	50.34	50.61
VIT_05s0029g01570.t01	Wine grape	cytosol	35.0	50.5
KRH23751	Soybean	endoplasmic reticulum	52.76	50.49
Bra003891.1-P	Field mustard	cytosol	43.79	50.4
CDX68278	Canola	cytosol	38.1	50.34
HORVU1Hr1G075150.4	Barley	plasma membrane	57.59	50.3
Solyc06g064940.2.1	Tomato	nucleus	49.83	49.83
Zm00001d010205_P002	Maize	cytosol	45.69	49.17
Solyc11g051160.1.1	Tomato	extracellular, plastid	49.48	48.73
CDY71835	Canola	cytosol	23.97	48.6
VIT_18s0041g00420.t01	Wine grape	cytosol	47.93	47.77
CDX68279	Canola	cytosol	42.76	46.7
Bra016084.1-P	Field mustard	cytosol	44.66	46.42
CDX96377	Canola	cytosol	44.14	46.04
Bra008012.1-P	Field mustard	cytosol	44.48	45.91
CDY03655	Canola	cytosol	44.48	45.66
AT1G72150.1	Thale cress	cytosol	45.0	45.55
Bra003892.1-P	Field mustard	cytosol	40.34	44.83
CDX82182	Canola	cytosol	44.31	44.7
CDY71842	Canola	cytosol	36.03	43.45
GSMUA_Achr5P07450_001	Banana	plastid	29.48	43.18
GSMUA_Achr2P18920_001	Banana	plastid	31.38	43.13
GSMUA_Achr9P17890_001	Banana	cytosol	28.97	42.64
GSMUA_Achr3P09950_001	Banana	plastid	30.69	41.98
GSMUA_Achr9P30580_001	Banana	cytosol	37.59	40.07
GSMUA_Achr1P05640_001	Banana	cytosol	28.28	39.52
AT1G22530.1	Thale cress	cytosol	43.97	37.34
Bra040854.1-P	Field mustard	cytosol	44.66	36.69
CDY21368	Canola	cytosol	41.03	36.5
AT4G09160.1	Thale cress	cytosol	40.86	35.48
CDY66581	Canola	cytosol	38.1	35.3
CDY05051	Canola	nucleus	40.69	34.01

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	EnsemblPlantsGene:GSMUA_Achr6G18780_001	EnsemblPlants:GSMUA_Achr6P18780_001	EnsemblPlants:GSMUA_Achr6T18780_001	InterPro:IPR001251	InterPro:IPR009038
InterPro:IPR036865	UniProt:M0T876	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866
PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087
UniParc:UPI000296EC32	SEG:seg	:	:	:	:

Description

Patellin-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18780_001]

Coordinates

chr6:-:12984129..12986959

Molecular Weight (calculated)

63301.7 Da

IEP (calculated)

4.427

GRAVY (calculated)

-0.487

Length

580 amino acids

Sequence
(BLAST)

001: MADEAQTKAH DAAPAAEVVV SEAPAEEKVA VTEAPPAVTA PEAVVAEEAE KPAEEAAPEA GEKKPKAEEG AAPAETTEAP SVSLKEESTA VPDPVDPEKK
101: ALDDFKQLVQ AALANNEFAP PPPPPSPPTP PAKEEESAPA KEEESKPEEP AAPATEEPKI ETEEPPKPAE TETPAPPEKV VAADEDGAKT VEAIEETVVA
201: VTAPPPATTE EVTPAAEEAT KEQPAETPAP PPAEPPEEVF IWGVPLVGDE KCDTILLKFL RARDFKVKDA MAMLKNAVIW RKQFGIEALL EEDLGLPELE
301: KAVFMHGVDK EGHPVCYNVY GEFQNKELYE KAFGDEEKRQ KFLKWRIQYL EKGIRELLDF SPGGISSMVQ VTDLKNTPRL GKHRQATKQA VTLLQDNYPE
401: FIAKKVFINV PWWYLAFNRM ISPFFTQRTK SKFVFAGPSK SAETLFKYIA PEQVPVAIGG LSKENDPDFT TADAVTEVTI KPSSKQSIEI PVPETTLLVW
501: ELRVLGWEVS YGAEFVPSAE DGYTVIVQKT RKLIATDEPV IKTSFKIGEP GKVVLNIENP TSKKKKLLYR SKAKSSAEST

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.