CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59683	Soybean	cytosol	87.65	93.51
KRG99105	Soybean	cytosol	18.43	71.62
KRH63933	Soybean	plasma membrane	67.65	69.84
KRH54012	Soybean	nucleus	66.43	68.58
GSMUA_Achr2P08100_001	Banana	cytosol	46.09	66.75
VIT_07s0031g03220.t01	Wine grape	cytosol	60.17	66.28
HORVU3Hr1G082150.1	Barley	cytosol	37.39	62.5
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	48.0	60.53
Zm00001d005249_P001	Maize	mitochondrion	29.04	60.29
Zm00001d005304_P001	Maize	mitochondrion	28.0	59.19
Zm00001d041705_P001	Maize	cytosol, mitochondrion	10.96	58.88
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	42.96	58.25
Zm00001d043169_P001	Maize	cytosol	21.22	57.82
GSMUA_Achr7P23220_001	Banana	cytosol	49.22	56.6
GSMUA_Achr6P18780_001	Banana	cytosol	53.39	52.93
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	47.13	52.12
KRH23751	Soybean	endoplasmic reticulum	54.09	51.32
KRH44929	Soybean	endoplasmic reticulum	50.78	50.69
GSMUA_Achr3P22170_001	Banana	cytosol	46.09	50.38
GSMUA_Achr5P25970_001	Banana	cytosol	48.17	49.91
Zm00001d012254_P003	Maize	mitochondrion	47.13	48.74
Zm00001d042664_P001	Maize	plasma membrane	47.83	48.16
KRH11846	Soybean	cytosol	38.78	47.96
KXG33790	Sorghum	cytosol	48.87	47.63
EES10230	Sorghum	cytosol	41.91	47.07
Os05t0429400-01	Rice	plasma membrane	47.83	47.01
KRH36854	Soybean	cytosol	38.09	46.9
TraesCS3B01G417500.1	Wheat	golgi	46.26	46.02
TraesCS3A01G385300.1	Wheat	cytosol	46.09	45.85
OQU78068	Sorghum	cytosol	41.91	45.82
Os01t0874700-01	Rice	plasma membrane	48.52	45.51
TraesCS3D01G378300.1	Wheat	cytosol	46.26	45.32
KRH65546	Soybean	cytosol	32.7	44.66
KRH76050	Soybean	cytosol	32.7	44.66
TraesCS1D01G268600.1	Wheat	golgi	47.3	44.59
Zm00001d038262_P001	Maize	plasma membrane	47.83	44.35
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	48.17	44.32
TraesCS1B01G279200.1	Wheat	cytosol	46.78	44.1
TraesCS1A01G268500.1	Wheat	cytosol	46.43	43.77
KRH00348	Soybean	cytosol	31.48	41.61
HORVU3Hr1G082110.2	Barley	plastid	46.09	41.09
Zm00001d010205_P002	Maize	cytosol	38.43	41.0
HORVU1Hr1G075150.4	Barley	plasma membrane	46.96	40.66
KRH19560	Soybean	cytosol	27.3	33.4
KRH32187	Soybean	cytosol	26.96	32.84

Protein Annotations

EntrezGene:100788197	Gene3D:2.60.120.680	Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02004747	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G005200	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	UniProt:I1KP02	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	EnsemblPlants:KRH41016	ProteinID:KRH41016	ProteinID:KRH41016.1	PFAM:PF00650
PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF139
SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002338FA0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:414123..417739

Molecular Weight (calculated)

65325.8 Da

IEP (calculated)

4.712

GRAVY (calculated)

-0.750

Length

575 amino acids

Sequence
(BLAST)

001: MAEETPNQTT TPPPPQESVV QVEEVVVTDV PQPDKTTTTV PVERDSQPQP YEPEKKKPVE ETVTLETHLS KPNNADHTNN IPEFIEESTK LSDLPENENK
101: ALQELKKLVQ DALNNHHFSS KHDNKKPPQT TAADNKEEQQ PQEVVTETKP DAAPAKTEEE HVETKKEEEK EEEEKEQVTE TKEEEAAVDD DGAKTVEAIE
201: ETVVAVSSTV QPQAEEKASE PEATKEESSP PLPPEEASIW GIPLLADERS DVILLKFLRA REFKVKEAFT MLKNTIQWRK EFGMEELMEE KLGDELEKVV
301: FMHGFDKEGH PVCYNIYEEF QNKELYKKTF SDEEKREKFL RWRIQFLEKS IRKLDFNPGG ICTIVHVNDL KNSPGLAKWE LRQATKHALQ LLQDNYPEFV
401: AKQVFINVPW WYLAVNRMIS PFLTQRTKSK FVFAGPSKST ETLLRYIAPE QLPVKYGGLG KDGEFGNTDA VTEITVRPAA KHTVEFSVTE NCLLSWELRV
501: IGWEVSYGAE FVPSSEGSYT VIVQKARKVA SSEEPVLCNS FKVGEPGKVV LTIDNTSSKK KKLLYRLKTK PSLSD

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.