CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99105	Soybean	cytosol	23.96	93.24
KRH23751	Soybean	endoplasmic reticulum	81.77	77.72
GSMUA_Achr2P08100_001	Banana	cytosol	43.75	63.48
HORVU3Hr1G082150.1	Barley	cytosol	36.81	61.63
Zm00001d041705_P001	Maize	cytosol, mitochondrion	11.28	60.75
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	43.06	58.49
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	46.18	58.33
CDY58916	Canola	cytosol	13.72	57.25
GSMUA_Achr7P23220_001	Banana	cytosol	49.13	56.6
Zm00001d043169_P001	Maize	cytosol	20.66	56.4
Zm00001d005249_P001	Maize	mitochondrion	27.08	56.32
Zm00001d005304_P001	Maize	mitochondrion	26.56	56.25
KRH59683	Soybean	cytosol	51.22	54.73
KRH54012	Soybean	nucleus	52.78	54.58
KRH63933	Soybean	plasma membrane	52.43	54.22
VIT_18s0041g00430.t01	Wine grape	cytosol	56.42	53.63
Solyc11g051160.1.1	Tomato	extracellular, plastid	52.26	51.1
KRH41016	Soybean	endoplasmic reticulum	50.69	50.78
GSMUA_Achr6P18780_001	Banana	cytosol	50.87	50.52
GSMUA_Achr3P22170_001	Banana	cytosol	45.83	50.19
Solyc06g064940.2.1	Tomato	nucleus	49.65	49.31
PGSC0003DMT400013297	Potato	cytosol	49.31	49.22
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	44.27	49.04
Zm00001d012254_P003	Maize	mitochondrion	46.88	48.56
CDY71835	Canola	cytosol	23.78	47.9
Zm00001d042664_P001	Maize	plasma membrane	46.88	47.29
TraesCS3A01G385300.1	Wheat	cytosol	47.4	47.23
GSMUA_Achr5P25970_001	Banana	cytosol	45.49	47.21
TraesCS3B01G417500.1	Wheat	golgi	47.22	47.06
KXG33790	Sorghum	cytosol	47.74	46.61
Os01t0874700-01	Rice	plasma membrane	49.31	46.33
EES10230	Sorghum	cytosol	40.8	45.9
Os05t0429400-01	Rice	plasma membrane	46.53	45.81
TraesCS3D01G378300.1	Wheat	cytosol	46.53	45.66
KRH11846	Soybean	cytosol	36.81	45.59
CDX68279	Canola	cytosol	42.01	45.57
KRH36854	Soybean	cytosol	36.81	45.4
Bra016084.1-P	Field mustard	cytosol	43.75	45.16
CDX96377	Canola	cytosol	43.58	45.14
Bra008012.1-P	Field mustard	cytosol	43.58	44.66
CDY03655	Canola	cytosol	43.58	44.42
AT1G72150.1	Thale cress	cytosol	43.92	44.15
TraesCS1B01G279200.1	Wheat	cytosol	46.35	43.77
KRH76050	Soybean	cytosol	31.77	43.47
CDX82182	Canola	cytosol	43.23	43.3
TraesCS1A01G268500.1	Wheat	cytosol	45.83	43.28
TraesCS1D01G268600.1	Wheat	golgi	45.66	43.11
KRH65546	Soybean	cytosol	31.42	42.99
OQU78068	Sorghum	cytosol	39.24	42.97
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	46.53	42.88
Zm00001d038262_P001	Maize	plasma membrane	46.01	42.74
Bra003892.1-P	Field mustard	cytosol	38.72	42.72
HORVU3Hr1G082110.2	Barley	plastid	47.22	42.17
KRH00348	Soybean	cytosol	31.77	42.07
CDY71842	Canola	cytosol	34.2	40.96
HORVU1Hr1G075150.4	Barley	plasma membrane	46.01	39.91
Zm00001d010205_P002	Maize	cytosol	35.94	38.4
AT1G22530.1	Thale cress	cytosol	43.23	36.46
CDY21368	Canola	cytosol	39.93	35.28
Bra040854.1-P	Field mustard	cytosol	43.23	35.27
KRH19560	Soybean	cytosol	27.26	33.4
CDY66581	Canola	cytosol	36.11	33.23
KRH32187	Soybean	cytosol	26.91	32.84

Protein Annotations

EntrezGene:100806382	Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02004977	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G239900	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	UniProt:I1KWA0
InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	EnsemblPlants:KRH44929	ProteinID:KRH44929	ProteinID:KRH44929.1
PFAM:PF00650	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF96	SMART:SM00516
SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002337DF9	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:20461422..20463932

Molecular Weight (calculated)

65212.5 Da

IEP (calculated)

4.492

GRAVY (calculated)

-0.677

Length

576 amino acids

Sequence
(BLAST)

001: MAEEPQKPAS AEEVVPVPAD TPPTTQSEAE AEVEANAESI EEVVAEAEKA QSGVEDKISQ SEAEAEAEVE ANAKSIEEVV AEAEKAQSGA EDKISQSVSF
101: KEETNVVGDL PEAQRKALDE LKRLVQEALN NHELTAPKPE PEKKKTELKA LEKKEEEVSE EKKEVEVTEE KKEAEVTEEK KEAEVTEEKK EVEVAEEKKE
201: VEVTEEKKEA EVIEEKKETE VIEEKKESVV PISPEEVEIW GIPLLGDERS DVILLKFLRA RDFKVKDALS MLRNTVRWRK EFGIEGLVEE DLGSDWDKVV
301: FSHGHDKEGH PVYYNVFGEF EDKELYNKTF WDEEKRNKLI RWMIQSLEKS VRSLDFSPTG ISTIVQVNDL KNSPGLGKRE LRQATNQVLQ LFQDNYPEFV
401: AKQIFINVPW WYLAFSRMIS PFFTQRTKSK FLFAGPSKSA HTLFQYIAPE LVPVQYGGLS REAEQEFTTS DPVTEVTIKP ATKHAVEFPV SEKSHAVWEI
501: RVVGWDVSYG AEFVPGAEDG YTVIVQKNRK IGPADETVIT NAFKIGEPGK IVLTIDNQTS KKKKLLYRSK TKPIPE

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.