Factsheet for GSMUA_Achr6P07270_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P08100_001	Banana	cytosol	55.0	72.04
VIT_09s0002g09040.t01	Wine grape	cytosol	14.81	67.54
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	59.23	67.54
KRG99105	Soybean	cytosol	18.08	63.51
GSMUA_Achr7P23220_001	Banana	cytosol	60.58	63.0
Bra000675.1-P	Field mustard	cytosol	35.77	60.0
CDX90715	Canola	cytosol	35.19	59.03
GSMUA_Achr6P18780_001	Banana	cytosol	62.31	55.86
GSMUA_Achr3P22170_001	Banana	cytosol	55.96	55.32
GSMUA_Achr5P25970_001	Banana	cytosol	56.73	53.15
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	43.08	52.83
VIT_07s0031g03220.t01	Wine grape	cytosol	52.5	52.3
PGSC0003DMT400065886	Potato	cytosol	48.65	51.53
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	48.46	51.43
KRH63933	Soybean	plasma membrane	54.42	50.81
KRH59683	Soybean	cytosol	52.5	50.65
KRH54012	Soybean	nucleus	53.65	50.09
CDY58916	Canola	cytosol	13.27	50.0
CDY50441	Canola	plasma membrane	45.96	49.28
CDX82180	Canola	nucleus	46.15	49.08
CDY03654	Canola	nucleus	45.77	48.67
Bra008013.1-P	Field mustard	nucleus	46.15	48.39
AT1G72160.1	Thale cress	nucleus	45.58	48.37
Bra003891.1-P	Field mustard	cytosol	46.54	48.02
CDX68278	Canola	cytosol	39.81	47.15
KRH41016	Soybean	endoplasmic reticulum	52.12	47.13
VIT_18s0041g00430.t01	Wine grape	cytosol	54.42	46.7
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	55.19	45.92
VIT_05s0029g01570.t01	Wine grape	cytosol	34.42	44.53
PGSC0003DMT400013297	Potato	cytosol	49.23	44.37
VIT_18s0041g00420.t01	Wine grape	cytosol	49.62	44.33
KRH44929	Soybean	endoplasmic reticulum	49.04	44.27
Solyc06g064940.2.1	Tomato	nucleus	48.65	43.62
Solyc11g051160.1.1	Tomato	extracellular, plastid	49.04	43.29
KRH23751	Soybean	endoplasmic reticulum	49.81	42.74
CDY71835	Canola	cytosol	23.27	42.31
GSMUA_Achr2P18920_001	Banana	plastid	33.85	41.71
GSMUA_Achr9P17890_001	Banana	cytosol	31.35	41.37
GSMUA_Achr5P07450_001	Banana	plastid	31.35	41.16
GSMUA_Achr3P09950_001	Banana	plastid	33.27	40.8
Bra008012.1-P	Field mustard	cytosol	44.04	40.75
CDY03655	Canola	cytosol	44.04	40.53
Bra016084.1-P	Field mustard	cytosol	43.27	40.32
CDX96377	Canola	cytosol	42.88	40.11
CDX68279	Canola	cytosol	40.77	39.92
CDX82182	Canola	cytosol	43.85	39.65
Bra003892.1-P	Field mustard	cytosol	38.85	38.7
AT1G72150.1	Thale cress	cytosol	42.31	38.39
GSMUA_Achr1P05640_001	Banana	cytosol	29.81	37.35
CDY71842	Canola	cytosol	34.42	37.21
GSMUA_Achr9P30580_001	Banana	cytosol	38.46	36.76
AT4G09160.1	Thale cress	cytosol	44.23	34.43
CDY05051	Canola	nucleus	43.85	32.85
AT1G22530.1	Thale cress	cytosol	43.08	32.8
CDY21368	Canola	cytosol	39.81	31.75
Bra040854.1-P	Field mustard	cytosol	42.88	31.59
CDY66581	Canola	cytosol	36.92	30.67

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	EnsemblPlantsGene:GSMUA_Achr6G07270_001	EnsemblPlants:GSMUA_Achr6P07270_001	EnsemblPlants:GSMUA_Achr6T07270_001
InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	UniProt:M0T4X6	PFAM:PF00650	PFAM:PF03765
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002952524	SEG:seg	:

Description

Patellin-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G07270_001]

Coordinates

chr6:+:4886875..4888995

Molecular Weight (calculated)

57444.0 Da

IEP (calculated)

5.695

GRAVY (calculated)

-0.199

Length

520 amino acids

Sequence
(BLAST)

001: MAEVSQSKAA AVAATEEVVV GKVALTPTDE VVKQLDVVPA PEVVKGPKKV ALLSALAAEA AAEAEEKRAC GAEKEAAEKA ASVFQAVSFK EESSLVADLE
101: DHEKKALDEM KQLVRAALAS REFSSAPPPP AASLAKEAKL EEPPASTLAP EQQSAADKNT VTANEDGAKT LEAIEETVVS EVLIWGIPLL VDERSDTVLI
201: KFLRARDFKA KEAMAMLKNA VLWREEFGIE ALLSEDLGVP ELERAVFMHG ADRAGHPVCY NVYGELQSKE LYALAFADEK KKKRFLRWRI QFLEKGIRNL
301: LDFTPGGIST MVQVADLKNS TGPAKELRHA FALLQDNYPE FVAMQIFINV PWWYLAFNRM MSPFFTQRTR SKFVFARPSN TAETLSKYIA PEQVPVRYGG
401: LSKENDPDFT SSDAVTEITI KPSMRQAIEI QVTEKCLLVW ELRVLGWEVT YGAEFVPRSE NGYTVIVQKE RKLVAADEPV LKGSFKIGEA GKIVLTVHNS
501: GSKRKKLLYR YKIKSSAEST

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.