Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052665_P001 | Maize | cytosol | 42.42 | 83.17 |
| GSMUA_Achr9P17890_001 | Banana | cytosol | 82.07 | 82.49 |
| GSMUA_Achr2P18920_001 | Banana | plastid | 85.1 | 79.86 |
| GSMUA_Achr3P09950_001 | Banana | plastid | 81.06 | 75.71 |
| Os05t0345175-01 | Rice | cytosol | 14.65 | 73.42 |
| EES18028 | Sorghum | plastid | 76.26 | 70.07 |
| Zm00001d038005_P001 | Maize | mitochondrion, plastid | 74.49 | 68.93 |
| TraesCS1D01G202700.1 | Wheat | plastid | 71.72 | 67.14 |
| TraesCS1A01G198900.1 | Wheat | plastid | 71.46 | 66.9 |
| TraesCS1B01G213900.1 | Wheat | plastid | 70.96 | 66.43 |
| Solyc09g015080.2.1 | Tomato | cytosol, plastid | 68.18 | 63.68 |
| Os05t0345100-00 | Rice | plastid | 50.0 | 63.46 |
| PGSC0003DMT400030364 | Potato | plastid | 68.18 | 63.38 |
| KRH65546 | Soybean | cytosol | 66.67 | 62.71 |
| KRH76050 | Soybean | cytosol | 66.67 | 62.71 |
| VIT_01s0137g00470.t01 | Wine grape | cytosol | 23.99 | 62.09 |
| CDX78026 | Canola | cytosol, plastid | 63.38 | 60.92 |
| Bra036782.1-P | Field mustard | cytosol, plastid | 63.38 | 60.92 |
| KRH00348 | Soybean | cytosol | 66.67 | 60.69 |
| CDX73705 | Canola | cytosol, plastid | 63.13 | 60.68 |
| VIT_08s0058g00640.t01 | Wine grape | cytosol, mitochondrion, nucleus | 68.69 | 60.58 |
| AT3G51670.1 | Thale cress | cytosol | 62.12 | 60.15 |
| Zm00001d010049_P001 | Maize | plastid | 75.25 | 59.36 |
| CDY29572 | Canola | cytosol, plastid | 40.91 | 58.48 |
| CDY13832 | Canola | cytosol, plastid | 40.91 | 58.48 |
| CDX78958 | Canola | cytosol, plastid | 40.91 | 58.48 |
| CDX73635 | Canola | cytosol, plastid | 40.91 | 58.48 |
| CDX90637 | Canola | cytosol | 56.82 | 55.97 |
| Bra012843.1-P | Field mustard | cytosol | 59.6 | 53.39 |
| GSMUA_Achr2P08100_001 | Banana | cytosol | 39.39 | 39.29 |
| CDY29036 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 56.82 | 37.75 |
| GSMUA_Achr9P08580_001 | Banana | cytosol, plasma membrane | 42.68 | 37.06 |
| GSMUA_Achr1P05640_001 | Banana | cytosol | 37.63 | 35.9 |
| GSMUA_Achr7P23220_001 | Banana | cytosol | 43.69 | 34.6 |
| HORVU1Hr1G051510.3 | Barley | plastid | 39.14 | 33.12 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 42.17 | 31.75 |
| GSMUA_Achr6P07270_001 | Banana | cytosol, nucleus, plastid | 41.16 | 31.35 |
| GSMUA_Achr9P30580_001 | Banana | cytosol | 40.91 | 29.78 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 43.18 | 29.48 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 39.14 | 27.93 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 41.67 | 26.4 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P07450_001 | EnsemblPlants:GSMUA_Achr5T07450_001 | EnsemblPlantsGene:GSMUA_Achr5G07450_001 | Gene3D:3.40.525.10 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf |
| InterPro:GOLD_dom | InterPro:GOLD_dom_sf | InterPro:IPR001251 | InterPro:IPR009038 | InterPro:IPR036865 | PANTHER:PTHR23324 |
| PANTHER:PTHR23324:SF57 | PFAM:PF00650 | PFscan:PS50191 | PFscan:PS50866 | SEG:seg | SMART:SM00516 |
| SUPFAM:SSF101576 | SUPFAM:SSF52087 | UniParc:UPI000295431D | UniProt:M0SWH4 | MapMan:35.1 | : |
Description
Patellin-6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07450_001]
Coordinates
chr5:+:5358189..5359850
Molecular Weight (calculated)
44369.3 Da
IEP (calculated)
9.062
GRAVY (calculated)
-0.277
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSQATPEP VPSPKPATKR SLLSSLMEVA AAATTATAAL QRSSSFKEDS YLASSLRSSE LKALQELKQL LSTSTKPISI WGVPSHAMLL QCAEWRREFG
101: ADGLADEELV GFKEMEGVVA YMHGWDRRGH PVCYNAYGVF KDKAMYDRIL GDAEKLQRFL RWRVQVMERG VRLLQLRPGG INSIIQVTDL KDMPKRELRA
201: ASKHILSLFQ DNYPEMVARK VFINVPWYFS VLYAMISPFL TDRTKSKFVI AREGNVAETL YKFIRPEFVP VQYGGLSRPG DLQNGPPKPA TEFTIKGGEK
301: VNLEIDGIEA EATIAWDIAV GGWDLDYGAE YVPSDEGSYT VVVEKTRRIP AAADEPIHDV FIAREAGKMV LSIDNTSSRR RKVAAYRYFV RKASSM
101: ADGLADEELV GFKEMEGVVA YMHGWDRRGH PVCYNAYGVF KDKAMYDRIL GDAEKLQRFL RWRVQVMERG VRLLQLRPGG INSIIQVTDL KDMPKRELRA
201: ASKHILSLFQ DNYPEMVARK VFINVPWYFS VLYAMISPFL TDRTKSKFVI AREGNVAETL YKFIRPEFVP VQYGGLSRPG DLQNGPPKPA TEFTIKGGEK
301: VNLEIDGIEA EATIAWDIAV GGWDLDYGAE YVPSDEGSYT VVVEKTRRIP AAADEPIHDV FIAREAGKMV LSIDNTSSRR RKVAAYRYFV RKASSM
001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV
Arabidopsis Description
PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.