CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76050	Soybean	cytosol	95.72	95.72
Solyc09g015080.2.1	Tomato	cytosol, plastid	81.47	80.9
PGSC0003DMT400030364	Potato	plastid	81.47	80.52
KRH00348	Soybean	cytosol	79.1	76.55
Zm00001d052665_P001	Maize	cytosol	36.58	76.24
Bra036782.1-P	Field mustard	cytosol, plastid	74.58	76.21
CDX78026	Canola	cytosol, plastid	74.58	76.21
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	81.24	76.17
AT3G51670.1	Thale cress	cytosol	73.87	76.04
CDX73705	Canola	cytosol, plastid	74.11	75.73
CDY13832	Canola	cytosol, plastid	48.69	74.01
CDY29572	Canola	cytosol, plastid	48.69	74.01
CDX78958	Canola	cytosol, plastid	48.69	74.01
CDX73635	Canola	cytosol, plastid	48.69	74.01
VIT_01s0137g00470.t01	Wine grape	cytosol	26.37	72.55
CDX90637	Canola	cytosol	67.22	70.4
GSMUA_Achr5P07450_001	Banana	plastid	62.71	66.67
GSMUA_Achr9P17890_001	Banana	cytosol	62.0	66.24
GSMUA_Achr2P18920_001	Banana	plastid	66.03	65.88
Bra012843.1-P	Field mustard	cytosol	68.88	65.61
Os05t0345175-01	Rice	cytosol	12.11	64.56
GSMUA_Achr3P09950_001	Banana	plastid	64.61	64.15
EES18028	Sorghum	plastid	65.08	63.57
Zm00001d038005_P001	Maize	mitochondrion, plastid	63.66	62.62
TraesCS1D01G202700.1	Wheat	plastid	62.47	62.17
TraesCS1B01G213900.1	Wheat	plastid	62.23	61.94
TraesCS1A01G198900.1	Wheat	plastid	61.76	61.47
Os05t0345100-00	Rice	plastid	42.04	56.73
Zm00001d010049_P001	Maize	plastid	65.08	54.58
KRG99105	Soybean	cytosol	16.86	47.97
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	67.22	47.48
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	41.33	41.04
KRH36854	Soybean	cytosol	44.89	40.47
KRH11846	Soybean	cytosol	44.42	40.22
KRH59683	Soybean	cytosol	43.94	34.32
KRH63933	Soybean	plasma membrane	44.66	33.75
KRH54012	Soybean	nucleus	44.66	33.75
KRH41016	Soybean	endoplasmic reticulum	44.66	32.7
KRH44929	Soybean	endoplasmic reticulum	42.99	31.42
HORVU1Hr1G051510.3	Barley	plastid	34.2	30.77
KRH23751	Soybean	endoplasmic reticulum	42.99	29.87
KRH19560	Soybean	cytosol	33.25	29.79
KRH32187	Soybean	cytosol	33.02	29.45

Protein Annotations

EntrezGene:100818918	Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02001379	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	EnsemblPlantsGene:GLYMA_03G044200	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	UniProt:I1JL47	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865
EnsemblPlants:KRH65546	ProteinID:KRH65546	ProteinID:KRH65546.1	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000233A4E4	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:5586338..5589780

Molecular Weight (calculated)

47650.4 Da

IEP (calculated)

9.165

GRAVY (calculated)

-0.391

Length

421 amino acids

Sequence
(BLAST)

001: MMDTTSSPLS LQTQKTTFQE LPEASPKPYK KGIVATLMGG GLFKEDNYFV SLLRSSEKKA LQELKTKLKA SFEDSPSDAS MWGIPLLGGD DKADVILLKF
101: LRARDFRVGD AHHMLMKCLS WRKEFGADTI LEEEFLGLKE LEGVVAYMQG YDKEGHPVCY NAYGVFKDKE MYERVFGDDE KLKKFLRWRV QVLERGIKVL
201: HFKPGGVNSL IQVTDLKDMP KRELRVASNQ ILSLFQDNYP EMVARKIFIN VPWYFSMLYS MFSPFLTQRT KSKFVISKEG NAAETLYKFM RPEDIPVQYG
301: GLNRPSDLQN GPPKPASEFT IKGGEKVNIQ IEGIEAGATI TWDIVVGGWD LEYSAEFVPN AEGSYTIAVE KPRKMGASEE AIHNSFTSKE SGKMVLSADN
401: TASRRKKVAA YRYFVRKSST I

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.