CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 19658398

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54012	Soybean	nucleus	92.46	92.46
KRG99105	Soybean	cytosol	18.85	70.95
KRH59683	Soybean	cytosol	68.22	70.5
KRH41016	Soybean	endoplasmic reticulum	69.84	67.65
VIT_07s0031g03220.t01	Wine grape	cytosol	63.02	67.24
GSMUA_Achr2P08100_001	Banana	cytosol	47.58	66.75
HORVU3Hr1G082150.1	Barley	cytosol	38.6	62.5
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	49.19	60.09
Zm00001d041705_P001	Maize	cytosol, mitochondrion	11.49	59.81
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	45.42	59.67
Zm00001d005249_P001	Maize	mitochondrion	29.62	59.57
Zm00001d005304_P001	Maize	mitochondrion	28.73	58.82
GSMUA_Achr7P23220_001	Banana	cytosol	52.42	58.4
Zm00001d043169_P001	Maize	cytosol	22.08	58.29
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	50.81	54.42
GSMUA_Achr6P18780_001	Banana	cytosol	55.12	52.93
KRH23751	Soybean	endoplasmic reticulum	57.09	52.48
KRH44929	Soybean	endoplasmic reticulum	54.22	52.43
GSMUA_Achr3P22170_001	Banana	cytosol	49.19	52.09
Zm00001d012254_P003	Maize	mitochondrion	51.53	51.62
GSMUA_Achr5P25970_001	Banana	cytosol	49.91	50.09
Zm00001d042664_P001	Maize	plasma membrane	51.35	50.09
KRH11846	Soybean	cytosol	41.65	49.89
KXG33790	Sorghum	cytosol	52.24	49.32
TraesCS3B01G417500.1	Wheat	golgi	51.17	49.31
EES10230	Sorghum	cytosol	45.24	49.22
Os05t0429400-01	Rice	plasma membrane	51.53	49.06
KRH36854	Soybean	cytosol	41.11	49.04
TraesCS3A01G385300.1	Wheat	cytosol	50.81	48.96
TraesCS3D01G378300.1	Wheat	cytosol	50.63	48.04
Os01t0874700-01	Rice	plasma membrane	52.78	47.96
TraesCS1D01G268600.1	Wheat	golgi	49.91	45.57
OQU78068	Sorghum	cytosol	42.91	45.44
TraesCS1A01G268500.1	Wheat	cytosol	49.73	45.41
TraesCS1B01G279200.1	Wheat	cytosol	49.73	45.41
KRH76050	Soybean	cytosol	34.29	45.37
Zm00001d038262_P001	Maize	plasma membrane	50.27	45.16
KRH65546	Soybean	cytosol	33.75	44.66
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	49.73	44.32
HORVU3Hr1G082110.2	Barley	plastid	50.63	43.72
KRH00348	Soybean	cytosol	33.39	42.76
HORVU1Hr1G075150.4	Barley	plasma membrane	49.37	41.42
Zm00001d010205_P002	Maize	cytosol	39.68	41.0
KRH19560	Soybean	cytosol	28.01	33.19
KRH32187	Soybean	cytosol	27.83	32.84

Protein Annotations

EntrezGene:100805585	Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02002729	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	EnsemblPlantsGene:GLYMA_04G205300	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	UniProt:K7KLB5
EnsemblPlants:KRH63933	ProteinID:KRH63933	ProteinID:KRH63933.1	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF139	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002339D93	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:47795153..47799012

Molecular Weight (calculated)

62471.4 Da

IEP (calculated)

4.540

GRAVY (calculated)

-0.579

Length

557 amino acids

Sequence
(BLAST)

001: MAEEVPKTST TQEEVVVSDV APAEKPDTTN VVVVPLEKDA QPQQNEEETS PEKKKENVTE TETESEVSKP SGDGNVPESG SFKEESTIVS DLPETEKKAL
101: QELKQLIQEA LNKHEFSAVP TSNPPKDEKP DNKEEQNPAE EEEKQQVFDA AADVAEATEK EAAEVKVTET EVDEEKVAVS ASSADEDGAK TVEAIEESVV
201: SVTVSEEAKV EAVSASPEEV SIWGVPLLAD ERSDVILLKF LRARDFKVKE AFAMIKGTIR WRKEFKMEEL LLEDLGDDLE KAVYMHGFDK EGHPVCYNIY
301: GEFQNKELYK KSFSDEEKRY RFLRWRIQFL EKSIRKLDFN PGGISTIVQV NDLKNSPGPA KWELRQATKQ ALQLLQDNYP EFVAKQVFIN VPWWYLAVNR
401: MISPFLTQRT KSKFVFAGPS KSAETLLRYI AAEQLPVKYG GLSKDGEFGI SDAVTEITVR PAAKHTVEFP VTENSLLSWE LRVIGWDVSY GAEFVPTSEG
501: SYTVIIQKAR KVASSEEPVL CNNYKIGEPG KVVLTIDNQS SKKKKLLYRL KVKPSSD

Best Arabidopsis Sequence Match ( AT1G22530.1 )
(BLAST)

001: MAQEEIQKPT ASVPVVKEET PAPVKEVEVP VTTEKAVAAP APEATEEKVV SEVAVPETEV TAVKEEEVAT GKEILQSESF KEEGYLASEL QEAEKNALAE
101: LKELVREALN KREFTAPPPP PAPVKEEKVE EKKTEETEEK KEEVKTEEKS LEAETKEEEK SAAPATVETK KEEILAAPAP IVAETKKEET PVAPAPVETK
201: PAAPVVAETK KEEILPAAPV TTETKVEEKV VPVETTPAAP VTTETKEEEK AAPVTTETKE EEKAAPGETK KEEKATASTQ VKRASKFIKD IFVSVTTSEK
301: KKEEEKPAVV TIEKAFAADQ EEETKTVEAV EESIVSITLP ETAAYVEPEE VSIWGIPLLE DERSDVILLK FLRARDFKVK EAFTMLKNTV QWRKENKIDD
401: LVSEDLEGSE FEKLVFTHGV DKQGHVVIYS SYGEFQNKEI FSDKEKLSKF LKWRIQFQEK CVRSLDFSPE AKSSFVFVSD FRNAPGLGQR ALWQFIKRAV
501: KQFEDNYPEF VAKELFINVP WWYIPYYKTF GSIITSPRTR SKMVLSGPSK SAETIFKYVA PEVVPVKYGG LSKDSPFTVE DGVTEAVVKS TSKYTIDLPA
601: TEGSTLSWEL RVLGADVSYG AQFEPSNEAS YTVIVSKNRK VGLTDEPVIT DSFKASEAGK VVITIDNQTF KKKKVLYRSK TQA

Arabidopsis Description

PATL2Patellin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.