Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 23353019 plasma membrane: 23508561 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
23353019
doi
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005029_P001 | |
| Zm00001d052380_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72160.1 | Zm00001d005029_P001 | AT3G54220.1 | 19228333 |
| AT1G72160.1 | Zm00001d052380_P001 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012254_P003 | Maize | mitochondrion | 86.16 | 88.49 |
| HORVU3Hr1G082150.1 | Barley | cytosol | 53.24 | 88.37 |
| EES10230 | Sorghum | cytosol | 76.01 | 84.77 |
| Os01t0874700-01 | Rice | plasma membrane | 84.24 | 78.47 |
| Zm00001d005249_P001 | Maize | mitochondrion | 38.0 | 78.34 |
| Zm00001d005304_P001 | Maize | mitochondrion | 36.95 | 77.57 |
| Zm00001d043169_P001 | Maize | cytosol | 28.37 | 76.78 |
| Zm00001d041705_P001 | Maize | cytosol, mitochondrion | 14.36 | 76.64 |
| TraesCS3B01G417500.1 | Wheat | golgi | 76.36 | 75.43 |
| TraesCS3A01G385300.1 | Wheat | cytosol | 76.36 | 75.43 |
| TraesCS3D01G378300.1 | Wheat | cytosol | 76.71 | 74.62 |
| HORVU3Hr1G082110.2 | Barley | plastid | 75.83 | 67.13 |
| Zm00001d038262_P001 | Maize | plasma membrane | 71.28 | 65.65 |
| GSMUA_Achr7P23220_001 | Banana | cytosol | 56.92 | 65.0 |
| VIT_09s0002g09040.t01 | Wine grape | cytosol | 12.78 | 64.04 |
| KRG99105 | Soybean | cytosol | 15.94 | 61.49 |
| Zm00001d010205_P002 | Maize | cytosol | 57.27 | 60.67 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 61.12 | 60.17 |
| Bra000675.1-P | Field mustard | cytosol | 32.05 | 59.03 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 53.94 | 58.56 |
| CDX90715 | Canola | cytosol | 31.35 | 57.74 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 55.87 | 57.48 |
| KRH23753 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 41.51 | 55.9 |
| VIT_07s0031g03220.t01 | Wine grape | cytosol | 48.51 | 53.07 |
| KRH63933 | Soybean | plasma membrane | 50.09 | 51.35 |
| KRH54012 | Soybean | nucleus | 49.91 | 51.17 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 55.17 | 50.4 |
| CDY58916 | Canola | cytosol | 12.08 | 50.0 |
| KRH59683 | Soybean | cytosol | 46.76 | 49.54 |
| Zm00001d052665_P001 | Maize | cytosol | 17.51 | 49.51 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 42.38 | 49.39 |
| PGSC0003DMT400065886 | Potato | cytosol | 42.38 | 49.29 |
| VIT_18s0041g00430.t01 | Wine grape | cytosol | 52.01 | 49.01 |
| CDX82180 | Canola | nucleus | 41.51 | 48.47 |
| CDY03654 | Canola | nucleus | 41.51 | 48.47 |
| CDY50441 | Canola | plasma membrane | 41.16 | 48.45 |
| Bra008013.1-P | Field mustard | nucleus | 42.03 | 48.39 |
| KRH41016 | Soybean | endoplasmic reticulum | 48.16 | 47.83 |
| Bra003891.1-P | Field mustard | cytosol | 42.03 | 47.62 |
| AT1G72160.1 | Thale cress | nucleus | 40.81 | 47.55 |
| Solyc06g064940.2.1 | Tomato | nucleus | 47.81 | 47.07 |
| VIT_05s0029g01570.t01 | Wine grape | cytosol | 33.1 | 47.01 |
| PGSC0003DMT400013297 | Potato | cytosol | 47.46 | 46.97 |
| KRH44929 | Soybean | endoplasmic reticulum | 47.29 | 46.88 |
| KRH23751 | Soybean | endoplasmic reticulum | 49.39 | 46.53 |
| CDX68278 | Canola | cytosol | 35.73 | 46.47 |
| VIT_18s0041g00420.t01 | Wine grape | cytosol | 46.76 | 45.88 |
| Solyc11g051160.1.1 | Tomato | extracellular, plastid | 46.23 | 44.82 |
| CDX68279 | Canola | cytosol | 39.93 | 42.94 |
| Zm00001d038005_P001 | Maize | mitochondrion, plastid | 31.87 | 42.52 |
| Bra016084.1-P | Field mustard | cytosol | 41.51 | 42.47 |
| CDX96377 | Canola | cytosol | 41.33 | 42.45 |
| Bra008012.1-P | Field mustard | cytosol | 41.68 | 42.35 |
| CDY03655 | Canola | cytosol | 41.86 | 42.3 |
| AT1G72150.1 | Thale cress | cytosol | 42.03 | 41.88 |
| Bra003892.1-P | Field mustard | cytosol | 38.0 | 41.57 |
| CDY71835 | Canola | cytosol | 20.67 | 41.26 |
| CDX82182 | Canola | cytosol | 40.98 | 40.7 |
| CDY71842 | Canola | cytosol | 33.63 | 39.92 |
| Zm00001d046995_P001 | Maize | plasma membrane | 36.08 | 38.94 |
| Zm00001d010049_P001 | Maize | plastid | 32.92 | 37.45 |
| AT1G22530.1 | Thale cress | cytosol | 41.51 | 34.7 |
| CDY21368 | Canola | cytosol | 39.4 | 34.51 |
| Bra040854.1-P | Field mustard | cytosol | 42.56 | 34.42 |
| CDY66581 | Canola | cytosol | 37.13 | 33.87 |
| AT4G09160.1 | Thale cress | cytosol | 39.05 | 33.38 |
| CDY05051 | Canola | nucleus | 39.23 | 32.28 |
Protein Annotations
| EntrezGene:100284590 | Gene3D:3.40.525.10 | MapMan:35.1 | EMBL:BT063301 | UniProt:C0P4T2 | InterPro:CRAL-TRIO_dom |
| InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | InterPro:GOLD_dom | InterPro:GOLD_dom_sf | InterPro:IPR001251 |
| InterPro:IPR009038 | InterPro:IPR036865 | ProteinID:ONM36007.1 | ProteinID:ONM36008.1 | PFAM:PF00650 | PFAM:PF03765 |
| PFscan:PS50191 | PFscan:PS50866 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF143 | SMART:SM00516 | SMART:SM01100 |
| SUPFAM:SSF101576 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | UniParc:UPI00019490F8 | EnsemblPlantsGene:Zm00001d042664 | EnsemblPlants:Zm00001d042664_P001 |
| EnsemblPlants:Zm00001d042664_T001 | SEG:seg | : | : | : | : |
Description
Patellin-1
Coordinates
chr3:-:175917267..175920386
Molecular Weight (calculated)
62294.5 Da
IEP (calculated)
4.350
GRAVY (calculated)
-0.383
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEETQPEAA AAAAPAAAEV VVTEAAPAEA EVPVAAEAEA EAKDEKKGDE AELTADDAGV GTGSFKEESN LVEDLPDPEK KALDEFKQLI AAALAAGEFN
101: LPPPPPPPKA KETKVEEAKA EEPAKEEPAA EAEATAEEPK AQVAADAPVE EVKTEVPPAE EAKAETLAEE AKPSEPEPQE KTVVVTEEET ATKTVEAIEE
201: TVVSAPAAIP EEAAAPEAVV EAQATAPEPV LIWGVPLVGD DERTDTVLLK FLRAREFKVK DAMAMLKSAV LWRKRFGITS LLDADLGLTE LENVVFYRGT
301: DREGHPVCYN VYGEFQDKDL YEKAFGDDEK RERFLKWRIQ LLERGILSKL DFSPSGICSM VQVTDLKNSP PMLGKHRAVT RQAVTLLQDN YPEFIAKKVF
401: INVPWWYLAA NKMMSPFLTQ RTKSKFVFAS PAKSAATLFR YIAPEQVPVQ FGGLFKEDDP EFTTSDTVSE LTIKPSSKET VEIPVTENST IVWELRVLSW
501: EVSYGAEFTP DAEGGYTVIV QKTRKVPANE EPIMKGSFKA GEPGKLVLTV NNPASKKKTL LYRSKVKSTS E
101: LPPPPPPPKA KETKVEEAKA EEPAKEEPAA EAEATAEEPK AQVAADAPVE EVKTEVPPAE EAKAETLAEE AKPSEPEPQE KTVVVTEEET ATKTVEAIEE
201: TVVSAPAAIP EEAAAPEAVV EAQATAPEPV LIWGVPLVGD DERTDTVLLK FLRAREFKVK DAMAMLKSAV LWRKRFGITS LLDADLGLTE LENVVFYRGT
301: DREGHPVCYN VYGEFQDKDL YEKAFGDDEK RERFLKWRIQ LLERGILSKL DFSPSGICSM VQVTDLKNSP PMLGKHRAVT RQAVTLLQDN YPEFIAKKVF
401: INVPWWYLAA NKMMSPFLTQ RTKSKFVFAS PAKSAATLFR YIAPEQVPVQ FGGLFKEDDP EFTTSDTVSE LTIKPSSKET VEIPVTENST IVWELRVLSW
501: EVSYGAEFTP DAEGGYTVIV QKTRKVPANE EPIMKGSFKA GEPGKLVLTV NNPASKKKTL LYRSKVKSTS E
001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE
Arabidopsis Description
PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.