Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82754 | Sorghum | plastid | 93.71 | 88.05 |
| Zm00001d005029_P001 | Maize | plastid | 87.57 | 86.28 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 73.2 | 83.59 |
| Os11t0124300-01 | Rice | nucleus, plastid | 80.39 | 82.49 |
| Os12t0122000-01 | Rice | plastid | 81.44 | 82.42 |
| TraesCS5B01G143100.1 | Wheat | plastid | 76.35 | 79.94 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 73.8 | 79.9 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 37.72 | 79.75 |
| TraesCS5A01G144000.1 | Wheat | plastid | 77.25 | 79.63 |
| TraesCS5D01G148000.1 | Wheat | plastid | 77.4 | 79.17 |
| TraesCS4B01G124000.1 | Wheat | plastid | 76.65 | 75.41 |
| TraesCS4D01G122000.1 | Wheat | plastid | 76.65 | 75.41 |
| GSMUA_Achr11P... | Banana | plastid | 55.84 | 64.98 |
| CDX78219 | Canola | nucleus, plastid | 54.64 | 60.53 |
| CDX73496 | Canola | nucleus, plastid | 55.54 | 59.65 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 58.08 | 57.74 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 55.69 | 56.97 |
| Zm00001d021826_P001 | Maize | cytosol | 36.38 | 53.76 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 56.89 | 53.75 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 59.88 | 51.15 |
| Solyc10g074680.1.1 | Tomato | cytosol | 59.73 | 48.31 |
| PGSC0003DMT400043358 | Potato | cytosol | 59.43 | 48.06 |
| KRH40615 | Soybean | nucleus, plastid | 56.44 | 45.81 |
| KRH00551 | Soybean | nucleus, plastid | 56.29 | 44.66 |
| Zm00001d038518_P001 | Maize | cytosol | 26.05 | 35.01 |
| Zm00001d042127_P001 | Maize | plastid | 22.01 | 32.89 |
| Zm00001d044065_P001 | Maize | cytosol | 22.75 | 32.0 |
| Zm00001d011881_P001 | Maize | cytosol | 20.96 | 31.18 |
| Zm00001d046783_P001 | Maize | mitochondrion | 18.86 | 27.63 |
| Zm00001d015815_P001 | Maize | cytosol | 17.07 | 27.4 |
| Zm00001d025133_P001 | Maize | cytosol | 20.06 | 27.13 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 19.91 | 26.71 |
| Zm00001d042472_P001 | Maize | cytosol | 21.41 | 26.58 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 22.6 | 26.54 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 21.86 | 26.5 |
| Zm00001d033680_P001 | Maize | nucleus | 24.25 | 25.71 |
| Zm00001d013465_P001 | Maize | cytosol | 23.95 | 25.6 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 18.26 | 25.05 |
| Zm00001d023248_P001 | Maize | cytosol | 18.71 | 24.7 |
| Zm00001d045507_P001 | Maize | plastid | 22.75 | 24.68 |
| Zm00001d009646_P001 | Maize | plastid | 16.92 | 23.79 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 15.72 | 22.73 |
| Zm00001d049249_P001 | Maize | plastid | 25.6 | 22.06 |
| Zm00001d052463_P001 | Maize | cytosol | 16.77 | 21.41 |
| Zm00001d023247_P001 | Maize | plastid | 16.62 | 19.82 |
Protein Annotations
| EntrezGene:100382261 | MapMan:15.5.12 | MapMan:26.3.1.5 | UniProt:A0A1Q0YY06 | ProteinID:AAG13663.1 | ProteinID:AQK57099.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF12 |
| UniProt:Q9FUZ7 | InterPro:TF_GRAS | UniParc:UPI00000A4009 | EnsemblPlantsGene:Zm00001d052380 | EnsemblPlants:Zm00001d052380_P001 | EnsemblPlants:Zm00001d052380_T001 |
| SEG:seg | : | : | : | : | : |
Description
scarecrow1 scarecrow1
Coordinates
chr4:+:188747594..188751193
Molecular Weight (calculated)
71166.7 Da
IEP (calculated)
6.619
GRAVY (calculated)
-0.197
Length
668 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPPPPPPL TPYCRRCPPP HLPPPPPSSP NHFLLHYLHQ LDHQEAAAAA MVRKRPASDM DLPPPRRHVT GDLSDVTAAA AAGVGGSGAP SSASAQLPAL
101: PTQLHQLPPA FQHHAPEVDV PAHPAPAAHA QAGGEATAST TAWVDGIIRD IIGSSGGAAV SITQLIHNVR EIIHPCNPGL ASLLELRLRS LLAADPAPLP
201: PPPQPQQHAL LHGAPAAAPA GLTLPPPPPL PDKRRHEHPP PCQQQQQEEP HPAPQSPKAP TAEETAAAAA AAQAAAAAAA KERKEEQRRK QRDEEGLHLL
301: TLLLQCAEAV NADNLDDAHQ TLLEIAELAT PFGTSTQRVA AYFAEAMSAR LVSSCLGLYA PLPPGSPAAA RLHGRVAAAF QVFNGISPFV KFSHFTANQA
401: IQEAFEREER VHIIDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASM EALEATGKRL SDFADTLGLP FEFCAVAEKA GNVDPEKLGV TRREAVAVHW
501: LHHSLYDVTG SDSNTLWLIQ RLAPKVVTMV EQDLSHSGSF LARFVEAIHY YSALFDSLDA SYGEDSPERH VVEQQLLSRE IRNVLAVGGP ARTGDVKFGS
601: WREKLAQSGF RAASLAGSAA AQASLLLGMF PSDGYTLVEE NGALKLGWKD LCLLTASAWR PIQVPPCR
101: PTQLHQLPPA FQHHAPEVDV PAHPAPAAHA QAGGEATAST TAWVDGIIRD IIGSSGGAAV SITQLIHNVR EIIHPCNPGL ASLLELRLRS LLAADPAPLP
201: PPPQPQQHAL LHGAPAAAPA GLTLPPPPPL PDKRRHEHPP PCQQQQQEEP HPAPQSPKAP TAEETAAAAA AAQAAAAAAA KERKEEQRRK QRDEEGLHLL
301: TLLLQCAEAV NADNLDDAHQ TLLEIAELAT PFGTSTQRVA AYFAEAMSAR LVSSCLGLYA PLPPGSPAAA RLHGRVAAAF QVFNGISPFV KFSHFTANQA
401: IQEAFEREER VHIIDLDIMQ GLQWPGLFHI LASRPGGPPR VRLTGLGASM EALEATGKRL SDFADTLGLP FEFCAVAEKA GNVDPEKLGV TRREAVAVHW
501: LHHSLYDVTG SDSNTLWLIQ RLAPKVVTMV EQDLSHSGSF LARFVEAIHY YSALFDSLDA SYGEDSPERH VVEQQLLSRE IRNVLAVGGP ARTGDVKFGS
601: WREKLAQSGF RAASLAGSAA AQASLLLGMF PSDGYTLVEE NGALKLGWKD LCLLTASAWR PIQVPPCR
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.