Factsheet for Zm00001d047796_P003

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, nucleus

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

extracellular: 20408568
nucleus: 24677780
plasma membrane: 27341663

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d017601_P001
Zm00001d028654_P002
Zm00001d047796_P003
Zm00001d052380_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78570.1	Zm00001d017601_P001	AT1G63000.1	21798944
AT1G78570.1	Zm00001d028654_P002	AT1G78570.1	21798944
AT1G78570.1	Zm00001d047796_P003	AT1G78570.1	21798944
AT1G78570.1	Zm00001d005029_P001	AT3G54220.1	19228333
AT1G78570.1	Zm00001d052380_P001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95086	Sorghum	cytosol, mitochondrion, plastid	95.98	95.98
Zm00001d028654_P002	Maize	cytosol	94.49	94.49
Os03t0278200-01	Rice	nucleus, plasma membrane	94.05	93.63
TraesCS4A01G099200.1	Wheat	cytosol	93.75	93.33
TraesCS4D01G206000.1	Wheat	mitochondrion	93.9	92.52
TraesCS4B01G205100.3	Wheat	mitochondrion	93.6	92.23
HORVU4Hr1G059120.2	Barley	plastid	93.45	86.86
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	83.78	84.66
AT1G78570.1	Thale cress	cytosol, mitochondrion, peroxisome	84.23	84.6
CDX97601	Canola	cytosol, mitochondrion, plastid	81.25	84.52
CDX98494	Canola	cytosol, mitochondrion, plastid	81.1	84.37
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	79.46	83.96
AT3G14790.2	Thale cress	mitochondrion	83.33	83.96
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	83.63	83.88
CDY20084	Canola	cytosol, mitochondrion, peroxisome	80.21	83.7
CDY32340	Canola	cytosol, mitochondrion, peroxisome	80.06	83.67
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	79.91	83.39
CDY40003	Canola	cytosol, mitochondrion, plastid	82.74	82.99
CDY45116	Canola	cytosol, mitochondrion, peroxisome	81.85	82.71
CDY24092	Canola	cytosol, mitochondrion, peroxisome	81.85	82.71
CDY35137	Canola	cytosol, mitochondrion, plastid	82.29	82.54
CDY60210	Canola	cytosol, mitochondrion, peroxisome	81.99	82.48
CDY25850	Canola	cytosol, mitochondrion, peroxisome	52.53	82.48
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	81.55	82.41
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	81.85	82.34
AT1G53500.1	Thale cress	cytosol, extracellular, peroxisome	81.7	82.31
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	82.14	82.14
Zm00001d037784_P002	Maize	endoplasmic reticulum	83.18	80.32
CDX88455	Canola	cytosol, peroxisome, plastid	83.93	79.77
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	76.64	78.39
PGSC0003DMT400075973	Potato	cytosol, mitochondrion, peroxisome	74.4	76.45
Solyc08g069110.2.1	Tomato	unclear	73.96	76.34
Zm00001d017601_P001	Maize	extracellular, peroxisome	34.82	76.22
KRH16155	Soybean	cytosol	73.36	75.27
KRH04933	Soybean	cytosol, mitochondrion, plastid	72.02	75.16
Zm00001d029151_P002	Maize	extracellular, golgi	12.95	24.51
Zm00001d005598_P001	Maize	plastid	12.65	23.29
Zm00001d021249_P003	Maize	cytosol	12.5	23.14
Zm00001d020093_P002	Maize	golgi	9.97	22.19
Zm00001d045078_P001	Maize	extracellular, golgi	12.95	21.07
Zm00001d037087_P001	Maize	endoplasmic reticulum	13.69	20.91
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	13.99	20.89
Zm00001d049804_P001	Maize	plasma membrane	13.84	20.76
Zm00001d018350_P001	Maize	plasma membrane	13.39	20.5
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	12.65	20.09
Zm00001d028825_P001	Maize	golgi, mitochondrion	12.5	19.91
Zm00001d047683_P003	Maize	mitochondrion	12.35	19.58
Zm00001d047915_P001	Maize	plastid	13.69	19.21
Zm00001d021026_P001	Maize	endoplasmic reticulum	13.69	18.89
Zm00001d028427_P001	Maize	plastid	13.39	18.79
Zm00001d034293_P001	Maize	plastid	5.65	17.19
Zm00001d026311_P001	Maize	golgi, mitochondrion, plastid	12.35	16.44
Zm00001d002292_P004	Maize	endoplasmic reticulum, golgi	10.27	15.16
Zm00001d037310_P001	Maize	plastid	6.7	14.8
Zm00001d014509_P001	Maize	cytosol	5.95	13.94
Zm00001d038116_P001	Maize	plastid	5.95	12.35
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	6.25	12.14
Zm00001d017794_P001	Maize	plastid	6.7	12.06
Zm00001d017999_P002	Maize	mitochondrion	5.36	11.58

Protein Annotations

EMBL:BT066151	EMBL:EU970809	EnsemblPlants:Zm00001d047796_P003	EnsemblPlants:Zm00001d047796_T003	EnsemblPlantsGene:Zm00001d047796	EntrezGene:100285088
Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR43000
PANTHER:PTHR43000:SF15	PFAM:PF04321	PFAM:PF16363	ProteinID:AQL07624.1	ProteinID:AQL07625.1	ProteinID:AQL07626.1
SUPFAM:SSF51735	UniParc:UPI000182EF08	UniProt:B6U0P4	MapMan:3.13.6.1	:	:

Description

Trifunctional UDP-glucose 46-dehydratase/UDP-4-keto-6-deoxy-D-glucose 35-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2

Coordinates

chr9:-:141979586..141983345

Molecular Weight (calculated)

75895.8 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.350

Length

672 amino acids

Sequence
(BLAST)

001: MATYEPKNIL ITGAAGFIAS HVANRLVRNY PQYKIVVLDK IDYCSNLKNL NPSRSSPNFK FVKGDIASAD LVNYLLITES IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMQG LPLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTVKERRVID VAKDICKLFG LDTEKVIRFV ENRPFNDQRY FLDDQKLKRL
301: GWAERTPWEE GLKKTMEWYT TNPDYWGDVT GALLPHPRML MTPGVERHNW AEEIKSLASS PAEASTIAPA TSTKSISDAP QKPSYRFLIY GRTGWIGGLL
401: GKICEKQGIP YEYGKGRLEE RSQLLEDIRN VKPTHVFNAA GVTGRPNVDW CETHKQDTIR TNVVGTLNLA DVCRKQGLLM INYATGCIFE YDAKHPEGSG
501: IGFKEEDTPN FIGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLSNPR NFITKIARYD KVVNIPNSMT ILDELLPISI EMAKRDCRGI WNFTNPGAVS
601: HNEILEMYKK YINPDFKWTN FTLEEQAKVI VAPRSNNEMD TSKLKAEFPQ LLSIKDSLIK YVFEPNRKVP VN

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.