Factsheet for Zm00001d028427_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95171	Sorghum	plastid	98.54	98.33
Zm00001d047915_P001	Maize	plastid	96.45	96.45
TraesCS4A01G080300.1	Wheat	plastid	92.07	92.26
TraesCS4D01G224000.1	Wheat	plastid	92.48	91.91
TraesCS4B01G223700.1	Wheat	plastid	92.69	90.43
Os03t0249500-01	Rice	plastid	91.23	90.29
HORVU4Hr1G063010.1	Barley	peroxisome	91.44	85.21
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	35.7	72.46
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	63.67	70.93
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	67.22	70.15
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	60.54	66.67
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	53.86	66.49
PGSC0003DMT400059215	Potato	plastid	30.9	66.37
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	58.87	65.73
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	58.87	65.58
AT4G12250.1	Thale cress	cytosol, endoplasmic reticulum, golgi	59.08	64.91
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	58.87	64.83
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	58.66	64.6
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	58.46	64.52
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	57.62	64.34
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	57.62	64.34
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	57.41	64.1
Zm00001d045078_P001	Maize	extracellular, golgi	54.7	63.44
VIT_16s0022g01450.t01	Wine grape	mitochondrion	53.86	63.24
KRH40009	Soybean	plastid	53.03	62.41
Zm00001d037087_P001	Maize	endoplasmic reticulum	56.16	61.14
Solyc08g079440.1.1	Tomato	nucleus	56.16	60.45
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	55.95	60.09
Zm00001d018350_P001	Maize	plasma membrane	54.91	59.91
Zm00001d049804_P001	Maize	plasma membrane	54.91	58.71
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	53.44	56.89
Zm00001d021026_P001	Maize	endoplasmic reticulum	54.91	54.0
Zm00001d034293_P001	Maize	plastid	17.75	38.46
Zm00001d037310_P001	Maize	plastid	22.76	35.86
Zm00001d038116_P001	Maize	plastid	20.88	30.86
Zm00001d017794_P001	Maize	plastid	22.55	28.95
Zm00001d029151_P002	Maize	extracellular, golgi	19.0	25.63
Zm00001d005598_P001	Maize	plastid	19.21	25.21
Zm00001d021249_P003	Maize	cytosol	18.79	24.79
Zm00001d020093_P002	Maize	golgi	13.78	21.85
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	19.0	21.51
Zm00001d047683_P003	Maize	mitochondrion	18.16	20.52
Zm00001d028825_P001	Maize	golgi, mitochondrion	17.75	20.14
Zm00001d026311_P001	Maize	golgi, mitochondrion, plastid	17.95	17.03
Zm00001d002292_P004	Maize	endoplasmic reticulum, golgi	15.45	16.26
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	18.79	13.39
Zm00001d028654_P002	Maize	cytosol	18.37	13.1
Zm00001d037784_P002	Maize	endoplasmic reticulum	19.0	13.07
Zm00001d014509_P001	Maize	cytosol	7.31	12.2
Zm00001d017999_P002	Maize	mitochondrion	7.72	11.9
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	7.72	10.69
Zm00001d017601_P001	Maize	extracellular, peroxisome	2.71	4.23

Protein Annotations

EntrezGene:103633593	MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	UniProt:A0A1D6JW42	InterPro:Epimerase_deHydtase
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857
GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	ProteinID:ONL95987.1	PFAM:PF01370	PRINTS:PR01713
PANTHER:PTHR43574	PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	UniParc:UPI0004DE8F3E	EnsemblPlantsGene:Zm00001d028427	EnsemblPlants:Zm00001d028427_P001
EnsemblPlants:Zm00001d028427_T001	SEG:seg	:	:	:	:

Description

40S ribosomal protein S20

Coordinates

chr1:+:34657783..34659222

Molecular Weight (calculated)

51584.6 Da

IEP (calculated)

10.552

GRAVY (calculated)

-0.178

Length

479 amino acids

Sequence
(BLAST)

001: MAPQLTGAPG SAAAAGGAAA VKPQFHHYHH RLPPRHHHPS PTSLLSKLAF WSVCSLSLLL AFLLLSPAAP APRAAPESPR RSLHASPSST ASWGGAAWEK
101: KVRASARVRR SRGHSVLVTG AAGFVGCHAA AALRRRGDGV LGLDNFNNYY DTALKRGRAA LLARSGVYVV DGDIADAELL AKLFDVVPFT HVLHLAAQAG
201: VRHALVDPMS YVRANVAGLV ALLEAARSAN PQPAIVWASS SSVYGLNSHV PFSEHDRTDR PASLYAATKK AGEEIAHVYN HIYGLSLTAL RFFTVYGPWG
301: RPDMAYFFFT RDILAGRPIT VYESAGGGSH QTTISRDFTY IDDIVKGCVA ALDTAGRSTG SGGKKRGTAP FRTYNLGNTS PVPVTQLVDL LEKLLKVKAV
401: RKVVKMPRNG DVPYTHANVS LAQRELGYHP STDLQTGLKK FVRWYLEYYH PELAEKQKLR TSSNGKGSRG RNGSSISAR

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.