Factsheet for GSMUA_Achr4P17900_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
plastid 2
endoplasmic reticulum 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	42.09	76.69
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	77.67	72.77
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	70.23	69.43
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	62.09	68.81
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	66.98	67.13
PGSC0003DMT400059215	Potato	plastid	34.65	66.82
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	67.44	66.67
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	66.51	66.67
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	66.51	66.51
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	66.98	66.36
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	66.98	66.21
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	66.05	66.2
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	66.05	66.2
AT4G12250.1	Thale cress	cytosol, endoplasmic reticulum, golgi	66.98	66.06
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	66.98	64.57
VIT_16s0022g01450.t01	Wine grape	mitochondrion	61.16	64.46
KRH40009	Soybean	plastid	60.93	64.37
TraesCS4A01G080300.1	Wheat	plastid	71.16	64.02
EER95171	Sorghum	plastid	71.4	63.96
TraesCS4D01G224000.1	Wheat	plastid	71.4	63.69
Zm00001d028427_P001	Maize	plastid	70.93	63.67
Solyc08g079440.1.1	Tomato	nucleus	65.81	63.6
Zm00001d047915_P001	Maize	plastid	70.7	63.47
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	59.53	63.37
Os03t0249500-01	Rice	plastid	70.93	63.02
TraesCS4B01G223700.1	Wheat	plastid	71.86	62.93
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	60.23	62.56
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	58.84	62.47
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	59.53	61.69
HORVU4Hr1G063010.1	Barley	peroxisome	71.63	59.92
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	60.7	58.92
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	60.7	58.78
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	60.47	58.69
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	60.47	53.61
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	47.91	53.51
GSMUA_Achr5P25290_001	Banana	mitochondrion	13.95	51.72
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	59.53	50.1
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	29.77	27.71
GSMUA_Achr4P02670_001	Banana	golgi	20.0	24.64
GSMUA_Achr1P18740_001	Banana	cytosol	20.0	24.29
GSMUA_Achr5P13620_001	Banana	cytosol	19.53	23.93
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	18.84	23.21
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	18.84	23.21
GSMUA_Achr11P...	Banana	cytosol, golgi	20.0	21.99
GSMUA_Achr5P09200_001	Banana	golgi	18.14	21.97
GSMUA_Achr11P...	Banana	mitochondrion	19.77	20.38
GSMUA_Achr8P33320_001	Banana	mitochondrion	19.53	20.14
GSMUA_Achr3P23390_001	Banana	mitochondrion	19.3	19.9
GSMUA_Achr4P31860_001	Banana	mitochondrion	19.07	19.71
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	18.37	18.63
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	18.14	18.01
GSMUA_Achr9P06140_001	Banana	plastid	19.53	16.12
GSMUA_Achr6P26620_001	Banana	plastid	18.84	15.08
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	19.3	12.79
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	16.98	11.48
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	16.05	11.4
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	16.28	11.27
GSMUA_Achr4P02550_001	Banana	mitochondrion	6.98	6.58
GSMUA_Achr4P29060_001	Banana	cytosol	2.79	5.48
GSMUA_Achr5P10430_001	Banana	cytosol	3.26	4.58
GSMUA_Achr4P29070_001	Banana	cytosol	0.7	4.55
GSMUA_Achr1P03840_001	Banana	cytosol	2.79	3.92

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016857	GO:GO:0050662	EnsemblPlantsGene:GSMUA_Achr4G17900_001	EnsemblPlants:GSMUA_Achr4P17900_001	EnsemblPlants:GSMUA_Achr4T17900_001	UniProt:M0SPV3
InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF01370	PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF22
SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000294DB0F	SEG:seg	:	:

Description

UDP-glucuronate 4-epimerase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17900_001]

Coordinates

chr4:-:18321324..18322679

Molecular Weight (calculated)

47093.3 Da

IEP (calculated)

10.493

GRAVY (calculated)

-0.185

Length

430 amino acids

Sequence
(BLAST)

001: MMDSLPATPG KFKMDKPQYH HHHHHHPRQL TVRWHHYPLV SKVAVWSFLA IALLVAFFFL SPTTPNSSST SGRRSLRNAA PWGGPAWEKC VRSSARVRRS
101: GGISVLVTGA AGFVGTHVST ALKRRGDGVL GLDNFNDYYD PSLKRARQAL LDRAGVFVVE GDVNDGPLLH KLFDVVPFTH VMHLAAQAGV RYAMTNPSSY
201: PAVVWASSSS VYGLNSHVPF SEVDRTDRPA SLYAATKKAG EEIAHVYNHI YGLAITGLRF FTVYGPWGRP DMAYFFFTRD ILRSKPISIF EGPGHATVAR
301: DFTYIDDIVS GCLAALDNAG KSTGSGGKKR GSAPLRVYNL GNTSPVPVSH LVSILEQLLK VKAVRNVVKM PRNGDVQFTH ANISLAQREL GYHPTTGLNT
401: GLKKFVRWYL GYYPTSSSKK GSRGGSSSAL

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.