Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 87.84 | 88.04 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 79.5 | 79.68 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 77.03 | 70.52 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 65.32 | 69.71 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 69.14 | 68.07 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 67.57 | 66.96 |
| KRG97348 | Soybean | endoplasmic reticulum | 65.77 | 66.51 |
| Solyc09g092330.1.1 | Tomato | nucleus | 67.34 | 66.15 |
| GSMUA_Achr5P25290_001 | Banana | mitochondrion | 17.12 | 65.52 |
| KRH31569 | Soybean | mitochondrion | 67.57 | 64.94 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 66.22 | 64.76 |
| CDX77481 | Canola | endoplasmic reticulum | 65.77 | 64.46 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 65.77 | 64.32 |
| CDX85133 | Canola | endoplasmic reticulum | 65.77 | 64.04 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 66.22 | 63.91 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 66.22 | 63.91 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 65.54 | 63.82 |
| CDY64583 | Canola | endoplasmic reticulum | 65.99 | 63.7 |
| CDX92990 | Canola | endoplasmic reticulum | 65.32 | 63.6 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 62.16 | 63.59 |
| CDY53207 | Canola | endoplasmic reticulum | 65.09 | 63.52 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 65.77 | 63.48 |
| Zm00001d049804_P001 | Maize | plasma membrane | 63.06 | 62.5 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 67.34 | 62.42 |
| Os08t0526100-01 | Rice | plastid | 66.67 | 61.92 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 60.36 | 61.89 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 62.61 | 61.78 |
| TraesCS7D01G257800.1 | Wheat | plastid | 67.79 | 61.43 |
| TraesCS7A01G256600.1 | Wheat | plastid | 67.79 | 61.43 |
| TraesCS7B01G153900.1 | Wheat | plastid | 68.02 | 61.38 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 67.79 | 60.93 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 66.67 | 60.78 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, golgi | 55.41 | 60.74 |
| GSMUA_Achr4P17900_001 | Banana | endoplasmic reticulum, mitochondrion, peroxisome | 58.78 | 60.7 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 65.09 | 60.46 |
| GSMUA_Achr4P02040_001 | Banana | endoplasmic reticulum | 54.95 | 60.4 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 65.54 | 60.37 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 65.32 | 60.29 |
| HORVU7Hr1G053260.2 | Barley | plastid | 66.44 | 60.2 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 66.89 | 59.64 |
| GSMUA_Achr9P13500_001 | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 55.41 | 59.28 |
| GSMUA_Achr3P04850_001 | Banana | endoplasmic reticulum | 55.18 | 59.18 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 64.64 | 58.22 |
| HORVU5Hr1G075660.1 | Barley | plastid | 65.32 | 57.09 |
| GSMUA_Achr5P18760_001 | Banana | endoplasmic reticulum, golgi, mitochondrion | 58.56 | 56.64 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi, nucleus | 42.34 | 48.83 |
| GSMUA_Achr7P16250_001 | Banana | cytosol, endoplasmic reticulum, golgi | 56.08 | 48.73 |
| GSMUA_Achr5P04690_001 | Banana | endoplasmic reticulum, golgi, nucleus | 27.25 | 26.19 |
| GSMUA_Achr5P13620_001 | Banana | cytosol | 18.47 | 23.36 |
| GSMUA_Achr4P02670_001 | Banana | golgi | 18.24 | 23.21 |
| GSMUA_Achr9P00170_001 | Banana | extracellular, golgi | 18.02 | 22.92 |
| GSMUA_Achr6P22620_001 | Banana | golgi, mitochondrion | 17.79 | 22.64 |
| GSMUA_Achr1P18740_001 | Banana | cytosol | 18.02 | 22.6 |
| GSMUA_Achr5P09200_001 | Banana | golgi | 17.79 | 22.25 |
| GSMUA_Achr11P... | Banana | cytosol, golgi | 18.92 | 21.48 |
| GSMUA_Achr8P33320_001 | Banana | mitochondrion | 19.59 | 20.86 |
| GSMUA_Achr11P... | Banana | mitochondrion | 19.14 | 20.38 |
| GSMUA_Achr3P23390_001 | Banana | mitochondrion | 18.92 | 20.14 |
| GSMUA_Achr4P31860_001 | Banana | mitochondrion | 17.57 | 18.75 |
| GSMUA_Achr8P27530_001 | Banana | cytosol, golgi, plastid | 17.34 | 18.16 |
| GSMUA_Achr3P16370_001 | Banana | golgi, mitochondrion, plastid | 17.12 | 17.55 |
| GSMUA_Achr9P06140_001 | Banana | plastid | 18.47 | 15.74 |
| GSMUA_Achr6P26620_001 | Banana | plastid | 17.57 | 14.53 |
| GSMUA_Achr4P10430_001 | Banana | cytosol, extracellular, mitochondrion | 18.92 | 12.94 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 17.12 | 11.95 |
| GSMUA_Achr3P31810_001 | Banana | cytosol, mitochondrion, peroxisome | 16.22 | 11.59 |
| GSMUA_Achr3P31820_001 | Banana | cytosol, mitochondrion, plastid | 15.77 | 11.57 |
| GSMUA_Achr4P02550_001 | Banana | mitochondrion | 7.66 | 7.46 |
| GSMUA_Achr4P29070_001 | Banana | cytosol | 0.9 | 6.06 |
| GSMUA_Achr4P29060_001 | Banana | cytosol | 2.93 | 5.94 |
| GSMUA_Achr5P10430_001 | Banana | cytosol | 3.38 | 4.9 |
| GSMUA_Achr1P03840_001 | Banana | cytosol | 3.15 | 4.58 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016857 | GO:GO:0050662 | EnsemblPlantsGene:GSMUA_Achr8G08790_001 | EnsemblPlants:GSMUA_Achr8P08790_001 | EnsemblPlants:GSMUA_Achr8T08790_001 | UniProt:M0TNT2 |
| InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF01370 | PFAM:PF16363 | PRINTS:PR01713 |
| PANTHER:PTHR43574 | PANTHER:PTHR43574:SF10 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI000295BFD9 | SEG:seg |
Description
UDP-glucuronate 4-epimerase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr8G08790_001]
Coordinates
chr8:+:5966033..5967719
Molecular Weight (calculated)
48475.2 Da
IEP (calculated)
10.375
GRAVY (calculated)
-0.119
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPDTSKA SKLERYNSYL RRRVSSAKLI AASSYILFRA TLLAALLLIF LFLLHSPPLL FSGSHYYSSS HSNHRSLLSS SSAAYGGAAW EQDVRRSATP
101: RRADGLSVLV TGAAGFVGTH CSLALKRRGD GVVGVDNFNA YYDPALKRSR QVLLTRHGVL VLDADINNVA LLAKLFDVVP FSHVLHLAAQ AGVRYATRNP
201: QSYPSIVWAS SSSVYGLNTE APFSELHRTD RPASLYAATK KAGEAIAHTY NHIYGLSITG LRFFTVYGPW GRPDMAYFSF TKSILSGKPI TLFRMPDGTA
301: VQRDFTFIED VVKGCLGALD TAKKSTGVAG GGKKRGPAQL RIYNLGNTSP VPVAKMVSIL EDLLRKKAKK NVVTLPQNGD VPFTHANVSL AERDFGYRPT
401: TDLATGLKKF VKWYVEYYGV EITKRINRKR KIAGEEEEGA AASA
101: RRADGLSVLV TGAAGFVGTH CSLALKRRGD GVVGVDNFNA YYDPALKRSR QVLLTRHGVL VLDADINNVA LLAKLFDVVP FSHVLHLAAQ AGVRYATRNP
201: QSYPSIVWAS SSSVYGLNTE APFSELHRTD RPASLYAATK KAGEAIAHTY NHIYGLSITG LRFFTVYGPW GRPDMAYFSF TKSILSGKPI TLFRMPDGTA
301: VQRDFTFIED VVKGCLGALD TAKKSTGVAG GGKKRGPAQL RIYNLGNTSP VPVAKMVSIL EDLLRKKAKK NVVTLPQNGD VPFTHANVSL AERDFGYRPT
401: TDLATGLKKF VKWYVEYYGV EITKRINRKR KIAGEEEEGA AASA
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.