Factsheet for GSMUA_Achr1P03840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
golgi 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P10430_001	Banana	cytosol	91.18	91.18
TraesCS6A01G257500.1	Wheat	peroxisome	85.95	87.67
TraesCS6D01G238800.1	Wheat	peroxisome	85.95	87.67
TraesCS6B01G267600.1	Wheat	peroxisome	85.62	87.33
GSMUA_Achr4P29070_001	Banana	cytosol	18.63	86.36
EES07456	Sorghum	cytosol, peroxisome, plastid	86.6	86.32
Zm00001d017601_P001	Maize	extracellular, peroxisome	85.62	85.34
Os02t0678400-01	Rice	plasma membrane	84.31	82.96
VIT_02s0025g04610.t01	Wine grape	cytosol	81.7	82.78
HORVU6Hr1G065690.1	Barley	peroxisome, plastid	84.97	81.5
CDY45969	Canola	cytosol	78.76	81.14
AT1G63000.1	Thale cress	cytosol	79.74	81.06
Bra027005.1-P	Field mustard	cytosol	78.43	80.81
CDY45471	Canola	cytosol	78.1	80.47
PGSC0003DMT400058533	Potato	cytosol	79.08	80.4
Solyc08g080140.2.1	Tomato	extracellular	78.76	80.07
KRH77471	Soybean	cytosol, endoplasmic reticulum	71.57	78.78
Bra019776.1-P	Field mustard	cytosol	79.74	76.01
CDY57072	Canola	cytosol, extracellular, peroxisome	80.07	75.85
CDX98052	Canola	cytosol	77.12	73.06
GSMUA_Achr4P29060_001	Banana	cytosol	44.12	61.64
GSMUA_Achr4P02550_001	Banana	mitochondrion	75.82	50.88
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	76.14	37.52
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	77.12	37.11
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	75.16	35.44
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	61.76	31.24
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	4.25	3.38
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	4.58	3.37
GSMUA_Achr3P23390_001	Banana	mitochondrion	4.58	3.36
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	4.25	3.22
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	4.58	3.15
GSMUA_Achr11P...	Banana	cytosol, golgi	3.92	3.07
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	3.92	2.96
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	3.92	2.9
GSMUA_Achr4P02670_001	Banana	golgi	3.27	2.87
GSMUA_Achr5P13620_001	Banana	cytosol	3.27	2.85
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	3.92	2.79
GSMUA_Achr8P33320_001	Banana	mitochondrion	3.59	2.64
GSMUA_Achr11P...	Banana	mitochondrion	3.59	2.64
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	4.25	2.54
GSMUA_Achr1P18740_001	Banana	cytosol	2.94	2.54
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	3.59	2.54
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	3.59	2.48
GSMUA_Achr4P31860_001	Banana	mitochondrion	3.27	2.4
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	3.59	2.38
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	2.61	2.29
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	2.61	2.29
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	3.27	2.26
GSMUA_Achr5P09200_001	Banana	golgi	2.61	2.25
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	2.94	2.12
GSMUA_Achr9P06140_001	Banana	plastid	3.59	2.11
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	3.27	2.06
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	2.94	1.96
GSMUA_Achr6P26620_001	Banana	plastid	3.27	1.86
GSMUA_Achr5P25290_001	Banana	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P03840_001	EnsemblPlants:GSMUA_Achr1T03840_001	EnsemblPlantsGene:GSMUA_Achr1G03840_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd
PANTHER:PTHR10366	PANTHER:PTHR10366:SF405	PFAM:PF04321	SUPFAM:SSF51735	UniParc:UPI000294D0D4	UniProt:M0RWU2
MapMan:3.13.6.1	:	:	:	:	:

Description

Probable rhamnose biosynthetic enzyme 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G03840_001]

Coordinates

chr1:+:3162994..3166222

Molecular Weight (calculated)

34044.7 Da

IEP (calculated)

5.734

GRAVY (calculated)

-0.232

Length

306 amino acids

Sequence
(BLAST)

001: MGLMTENGST AAGQEASSLK FLIYGRTGWI GGLLGRLCSE RGIPFAYGAG RLENRAQLEA DIASAAPTHV FNAAGVTGRP NVDWCETHRV ETIRANVVGT
101: LTLADVCRER GLILVNYATG CIFEYDGGHP LGSGIGFKEE DTPNFVGSFY SKTKAMVEEL LTNYENVCTL RVRMPISSDL TNPRNFITKI TRYEKVVNIP
201: NSMTILDELL PISIEMAKRN LTGIWNFTNP GAVSHNEILE MYRDYIDPNF TWKNFTLEEQ AQVIVAPRSN NELDTAKLKK EFPELLPIKE SLIKHVFEPN
301: QKTSTT

Best Arabidopsis Sequence Match ( AT1G63000.1 )
(BLAST)

001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A

Arabidopsis Description

NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.