Factsheet for GSMUA_Achr4P29070_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P10430_001	Banana	cytosol	87.88	18.95
GSMUA_Achr1P03840_001	Banana	cytosol	86.36	18.63
CDY71423	Canola	cytosol, nucleus	75.76	11.6
KRH57441	Soybean	cytosol	50.0	10.61
GSMUA_Achr4P02550_001	Banana	mitochondrion	71.21	10.31
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	71.21	7.57
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	72.73	7.55
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	71.21	7.24
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	28.79	3.14
GSMUA_Achr1P18740_001	Banana	cytosol	9.09	1.69
GSMUA_Achr4P02670_001	Banana	golgi	7.58	1.43
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	9.09	1.39
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	7.58	1.24
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	7.58	1.2
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	7.58	1.18
GSMUA_Achr9P06140_001	Banana	plastid	9.09	1.15
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	6.06	1.15
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	6.06	1.15
GSMUA_Achr5P13620_001	Banana	cytosol	6.06	1.14
GSMUA_Achr5P09200_001	Banana	golgi	6.06	1.13
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	6.06	1.04
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	7.58	1.03
GSMUA_Achr3P23390_001	Banana	mitochondrion	6.06	0.96
GSMUA_Achr6P26620_001	Banana	plastid	7.58	0.93
GSMUA_Achr4P29060_001	Banana	cytosol	3.03	0.91
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	6.06	0.9
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	6.06	0.9
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	6.06	0.87
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	6.06	0.78
GSMUA_Achr11P...	Banana	cytosol, golgi	4.55	0.77
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	4.55	0.74
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	4.55	0.72
GSMUA_Achr11P...	Banana	mitochondrion	4.55	0.72
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	4.55	0.7
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	4.55	0.68
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	4.55	0.65
GSMUA_Achr4P31860_001	Banana	mitochondrion	3.03	0.48
GSMUA_Achr8P33320_001	Banana	mitochondrion	3.03	0.48
GSMUA_Achr5P25290_001	Banana	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr4P29070_001	EnsemblPlants:GSMUA_Achr4T29070_001	EnsemblPlantsGene:GSMUA_Achr4G29070_001	Gene3D:3.40.50.720	PANTHER:PTHR10366	PANTHER:PTHR10366:SF405
UniParc:UPI00029675EA	UniProt:M0ST19	MapMan:3.13.6.1	:	:	:

Description

Probable rhamnose biosynthetic enzyme 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G29070_001]

Coordinates

chr4:+:27201050..27201250

Molecular Weight (calculated)

7819.5 Da

IEP (calculated)

9.839

GRAVY (calculated)

-0.779

Length

66 amino acids

Sequence
(BLAST)

1: MYRDYIDPKF TWKNFNLEEQ AKVIVAPRSN NELDAAKLKK EFPELLPVKE SPIKYVFKPN QKTSMT

Best Arabidopsis Sequence Match ( AT1G63000.1 )
(BLAST)

001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A

Arabidopsis Description

NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.