Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P18740_001 | |
| GSMUA_Achr5P13620_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12780.1 | GSMUA_Achr1P18740_001 | AT1G12780.1 | 21798944 |
| AT1G12780.1 | GSMUA_Achr5P13620_001 | AT1G12780.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P18740_001 | Banana | cytosol | 82.05 | 81.36 |
| KRH59827 | Soybean | extracellular, golgi | 78.06 | 78.29 |
| CDY21065 | Canola | cytosol | 77.49 | 77.49 |
| CDY31278 | Canola | cytosol | 77.49 | 77.49 |
| Bra016757.1-P | Field mustard | cytosol | 77.21 | 77.21 |
| VIT_02s0025g04210.t01 | Wine grape | cytosol | 76.92 | 77.14 |
| AT1G12780.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 76.92 | 76.92 |
| KRH41129 | Soybean | nucleus | 76.35 | 76.57 |
| CDY47346 | Canola | cytosol | 76.07 | 76.07 |
| CDY49193 | Canola | cytosol | 75.78 | 75.78 |
| KRH51264 | Soybean | plastid | 75.78 | 75.78 |
| Solyc08g080570.2.1 | Tomato | cytosol | 75.78 | 75.78 |
| Bra027626.1-P | Field mustard | cytosol | 75.5 | 75.5 |
| PGSC0003DMT400007898 | Potato | cytosol | 75.5 | 75.5 |
| AT1G63180.1 | Thale cress | cytosol | 75.21 | 75.21 |
| CDY69000 | Canola | cytosol | 71.23 | 74.63 |
| Bra019785.1-P | Field mustard | cytosol | 70.94 | 74.33 |
| KRH00406 | Soybean | cytosol, mitochondrion, nucleus | 14.53 | 73.91 |
| Bra039253.1-P | Field mustard | cytosol | 72.08 | 72.91 |
| KRG99450 | Soybean | cytosol, mitochondrion, nucleus | 14.24 | 72.46 |
| KXG36042 | Sorghum | cytosol | 72.93 | 70.33 |
| Zm00001d021249_P003 | Maize | cytosol | 72.36 | 69.97 |
| GSMUA_Achr9P00170_001 | Banana | extracellular, golgi | 67.81 | 68.19 |
| GSMUA_Achr6P22620_001 | Banana | golgi, mitochondrion | 67.52 | 67.91 |
| GSMUA_Achr4P02670_001 | Banana | golgi | 66.95 | 67.34 |
| TraesCS5B01G315700.1 | Wheat | cytosol | 69.8 | 66.58 |
| TraesCS5A01G314800.1 | Wheat | cytosol | 69.8 | 66.58 |
| Os09t0526700-01 | Rice | cytosol | 70.09 | 65.95 |
| GSMUA_Achr5P09200_001 | Banana | golgi | 66.67 | 65.92 |
| TraesCS5D01G321100.1 | Wheat | cytosol | 69.23 | 65.85 |
| HORVU5Hr1G080860.10 | Barley | mitochondrion | 69.23 | 57.31 |
| GSMUA_Achr8P27530_001 | Banana | cytosol, golgi, plastid | 67.24 | 55.66 |
| GSMUA_Achr3P16370_001 | Banana | golgi, mitochondrion, plastid | 66.38 | 53.81 |
| GSMUA_Achr9P06140_001 | Banana | plastid | 68.09 | 45.87 |
| CDY60264 | Canola | plastid | 77.21 | 44.35 |
| GSMUA_Achr6P26620_001 | Banana | plastid | 67.81 | 44.32 |
| GSMUA_Achr11P... | Banana | cytosol, golgi | 37.89 | 34.02 |
| GSMUA_Achr8P33320_001 | Banana | mitochondrion | 38.18 | 32.13 |
| GSMUA_Achr3P23390_001 | Banana | mitochondrion | 37.89 | 31.89 |
| GSMUA_Achr11P... | Banana | mitochondrion | 37.61 | 31.65 |
| GSMUA_Achr4P31860_001 | Banana | mitochondrion | 36.75 | 31.01 |
| GSMUA_Achr4P02040_001 | Banana | endoplasmic reticulum | 24.22 | 21.04 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, golgi | 24.22 | 20.99 |
| GSMUA_Achr3P04850_001 | Banana | endoplasmic reticulum | 24.22 | 20.53 |
| GSMUA_Achr9P13500_001 | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 23.93 | 20.24 |
| GSMUA_Achr5P18760_001 | Banana | endoplasmic reticulum, golgi, mitochondrion | 25.64 | 19.61 |
| GSMUA_Achr4P17900_001 | Banana | endoplasmic reticulum, mitochondrion, peroxisome | 23.93 | 19.53 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 23.93 | 18.96 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 23.36 | 18.51 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 23.36 | 18.47 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi, nucleus | 19.94 | 18.18 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 24.22 | 17.53 |
| GSMUA_Achr7P16250_001 | Banana | cytosol, endoplasmic reticulum, golgi | 23.36 | 16.05 |
| GSMUA_Achr5P25290_001 | Banana | mitochondrion | 4.84 | 14.66 |
| GSMUA_Achr4P10430_001 | Banana | cytosol, extracellular, mitochondrion | 25.36 | 13.71 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 22.22 | 12.26 |
| GSMUA_Achr5P04690_001 | Banana | endoplasmic reticulum, golgi, nucleus | 15.95 | 12.12 |
| GSMUA_Achr3P31810_001 | Banana | cytosol, mitochondrion, peroxisome | 21.37 | 12.08 |
| GSMUA_Achr3P31820_001 | Banana | cytosol, mitochondrion, plastid | 20.51 | 11.9 |
| GSMUA_Achr4P02550_001 | Banana | mitochondrion | 9.12 | 7.02 |
| GSMUA_Achr4P29070_001 | Banana | cytosol | 1.14 | 6.06 |
| GSMUA_Achr5P10430_001 | Banana | cytosol | 3.7 | 4.25 |
| GSMUA_Achr4P29060_001 | Banana | cytosol | 2.56 | 4.11 |
| GSMUA_Achr1P03840_001 | Banana | cytosol | 2.85 | 3.27 |
Protein Annotations
| KEGG:00052+5.1.3.2 | KEGG:00520+5.1.3.2 | MapMan:3.13.8 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003978 | GO:GO:0005975 | GO:GO:0006012 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016853 | GO:GO:0016857 | EnsemblPlantsGene:GSMUA_Achr5G13620_001 | EnsemblPlants:GSMUA_Achr5P13620_001 | EnsemblPlants:GSMUA_Achr5T13620_001 | UniProt:M0SY91 |
| InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF16363 | PRINTS:PR01713 | PANTHER:PTHR43725 |
| PANTHER:PTHR43725:SF9 | SUPFAM:SSF51735 | TIGRFAMs:TIGR01179 | InterPro:UDP_G4E | UniParc:UPI000296B23E | : |
Description
UDP-glucose 4-epimerase [Source:GMGC_GENE;Acc:GSMUA_Achr5G13620_001]
Coordinates
chr5:+:9822376..9826560
Molecular Weight (calculated)
39091.1 Da
IEP (calculated)
7.911
GRAVY (calculated)
-0.203
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSEGKIKGS VLVTGGAGFI GSHTVLQLLK EGFFVSVIDN LDNSLEEAVH RVRVLAGPHL SQNLRFHLGD IRSKDDLEEV FSNYDAVIHF AGLKAVGESV
101: AKPSLYYNNN LIGTLNLFEF MGKYGCKKMV FSSSATVYGQ PEKIPCVEDF KLKAMNPYGR TKLFLEDIAH DIQKADPEWR IILLRYFNPV GAHESGLIGE
201: DPKGIPNNLM PYIQQVAVGR LPVLNVYGYD YPTKDGSAIR DYIHVMDLAD GHIAALYKVT TAENIGCVAY NLGTGRGTSV LEMVNAFEKV VDKKIPIKLC
301: PRRLGDATAV YASTEKAQKE LGWKARYGIE EMCRDQWNWA FKNPYGYRPR P
101: AKPSLYYNNN LIGTLNLFEF MGKYGCKKMV FSSSATVYGQ PEKIPCVEDF KLKAMNPYGR TKLFLEDIAH DIQKADPEWR IILLRYFNPV GAHESGLIGE
201: DPKGIPNNLM PYIQQVAVGR LPVLNVYGYD YPTKDGSAIR DYIHVMDLAD GHIAALYKVT TAENIGCVAY NLGTGRGTSV LEMVNAFEKV VDKKIPIKLC
301: PRRLGDATAV YASTEKAQKE LGWKARYGIE EMCRDQWNWA FKNPYGYRPR P
001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L
Arabidopsis Description
UGE1Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42605]
SUBAcon: [peroxisome,cytoskeleton,cytosol]
SUBAcon: [peroxisome,cytoskeleton,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.