Factsheet for GSMUA_Achr8P27530_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

cytosol 3
plastid 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P18740_001
GSMUA_Achr3P16370_001
GSMUA_Achr4P02670_001
GSMUA_Achr5P09200_001
GSMUA_Achr5P13620_001
GSMUA_Achr6P22620_001
GSMUA_Achr6P26620_001
GSMUA_Achr8P27530_001
GSMUA_Achr9P00170_001
GSMUA_Achr9P06140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	GSMUA_Achr1P18740_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr5P13620_001	AT1G12780.1	21798944
AT4G23920.1	GSMUA_Achr3P16370_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr4P02670_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr5P09200_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P22620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr6P26620_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr8P27530_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P00170_001	AT4G10960.1	21798944
AT4G23920.1	GSMUA_Achr9P06140_001	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	66.75	81.09
GSMUA_Achr4P02670_001	Banana	golgi	66.27	80.52
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	82.08	80.37
GSMUA_Achr5P09200_001	Banana	golgi	67.22	80.28
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	65.57	79.66
Bra019257.1-P	Field mustard	plastid	64.39	78.45
Bra035262.1-P	Field mustard	golgi	63.92	78.1
CDX86828	Canola	golgi	63.92	78.1
CDY40862	Canola	cytosol, golgi	63.92	78.1
AT4G10960.1	Thale cress	golgi	64.39	77.78
CDY47611	Canola	golgi	63.21	77.01
CDY50431	Canola	cytosol	63.21	77.01
Bra013744.1-P	Field mustard	cytosol, golgi	62.97	76.72
CDY03506	Canola	cytosol, golgi	62.97	76.72
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	62.97	76.72
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	62.74	76.44
AT4G23920.1	Thale cress	cytosol	62.97	76.29
CDY47846	Canola	golgi	60.85	75.22
Bra027732.1-P	Field mustard	golgi	60.85	75.22
CDY08378	Canola	golgi	60.85	74.78
AT1G64440.1	Thale cress	cytosol, golgi	61.32	74.71
Os09t0323000-01	Rice	cytosol	62.03	71.27
EER98731	Sorghum	plastid	60.85	70.49
Zm00001d005598_P001	Maize	plastid	60.61	70.41
HORVU5Hr1G055920.8	Barley	plastid	61.32	69.52
TraesCS5A01G183100.1	Wheat	plastid	60.85	68.8
TraesCS5B01G181300.1	Wheat	plastid	60.85	68.8
TraesCS5D01G188200.1	Wheat	plastid	60.85	68.8
GSMUA_Achr1P18740_001	Banana	cytosol	56.37	67.51
GSMUA_Achr5P13620_001	Banana	cytosol	55.66	67.24
Zm00001d020093_P002	Maize	golgi	47.41	66.56
Os08t0374800-01	Rice	golgi	62.26	64.71
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	62.97	63.12
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	62.97	63.12
GSMUA_Achr9P06140_001	Banana	plastid	73.11	59.5
GSMUA_Achr6P26620_001	Banana	plastid	71.93	56.8
GSMUA_Achr11P...	Banana	cytosol, golgi	34.43	37.34
GSMUA_Achr4P31860_001	Banana	mitochondrion	34.91	35.58
GSMUA_Achr8P33320_001	Banana	mitochondrion	34.67	35.25
GSMUA_Achr11P...	Banana	mitochondrion	34.2	34.77
GSMUA_Achr3P23390_001	Banana	mitochondrion	34.2	34.77
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	18.63	19.51
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	18.87	19.32
GSMUA_Achr5P25290_001	Banana	mitochondrion	5.19	18.97
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	17.92	18.81
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	20.05	18.52
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	18.63	18.37
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	17.92	18.31
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	18.63	17.83
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	18.4	17.61
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	18.16	17.34
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	19.34	16.91
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	19.1	15.85
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	14.39	15.84
GSMUA_Achr4P10430_001	Banana	cytosol, extracellular, mitochondrion	20.28	13.25
GSMUA_Achr5P04690_001	Banana	endoplasmic reticulum, golgi, nucleus	13.21	12.12
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	17.45	11.64
GSMUA_Achr3P31810_001	Banana	cytosol, mitochondrion, peroxisome	16.98	11.59
GSMUA_Achr3P31820_001	Banana	cytosol, mitochondrion, plastid	16.27	11.4
GSMUA_Achr4P29070_001	Banana	cytosol	1.18	7.58
GSMUA_Achr4P02550_001	Banana	mitochondrion	7.55	7.02
GSMUA_Achr5P10430_001	Banana	cytosol	3.07	4.25
GSMUA_Achr4P29060_001	Banana	cytosol	1.65	3.2
GSMUA_Achr1P03840_001	Banana	cytosol	2.12	2.94

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152
GO:GO:0016853	EnsemblPlantsGene:GSMUA_Achr8G27530_001	EnsemblPlants:GSMUA_Achr8P27530_001	EnsemblPlants:GSMUA_Achr8T27530_001	UniProt:M0TU56	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF11	SUPFAM:SSF51735	TIGRFAMs:TIGR01179
InterPro:UDP_G4E	UniParc:UPI0002969BDD	:	:	:	:

Description

UDP-glucose 4-epimerase GEPI48 [Source:GMGC_GENE;Acc:GSMUA_Achr8G27530_001]

Coordinates

chr8:+:30646170..30654120

Molecular Weight (calculated)

46486.7 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.104

Length

424 amino acids

Sequence
(BLAST)

001: MPSPPAAARN ILVTGGAGYI GSHTVLQLLK GGYRAVVVDN LDNSSEVALE RVRELAGEFG KNLDFHRIYF SIEIILLLIV LQFRISVVMT SLSSNEGNEP
101: ALDATLGEPS NASSGFFDTV WSQLPRIDLR DREALEKVFS STKFDAVIHF AGIKAVGESV RKPLLYYNNN LIGTIILFEV MAAYGCKKLV FSSSATVYGS
201: PKEVPCTEEY PLCAINPYGR TKLMTEDMCR DICQGDNEWD IILLRYFNPV GAHPSGYIGE DPRGIPNNLM PFVQQVAVGR RAALTVFGND YSTKDGTAVR
301: DYIHVVDLAD GHIAALQKLF EGSHIGCDVY NLATGRGTSV LEIVAAFEKA SGKKIPLVMA GRRPGDAEIV YASTAKAEKE LHWKAKYGIE EMCRDQWNWT
401: SKNPWGYKLP EAAANGNGKC PTSK

Best Arabidopsis Sequence Match ( AT1G12780.1 )
(BLAST)

001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L

Arabidopsis Description

UGE1Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42605]
SUBAcon: [peroxisome,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.