CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:

nucleus 1
cytosol 1
endoplasmic reticulum 1
golgi 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98731
EES14924
KXG36042

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23920.1	KXG36042	AT1G12780.1	21798944
AT4G23920.1	EER98731	AT4G10960.1	21798944
AT4G23920.1	EES14924	AT4G10960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	95.98	95.98
Os08t0374800-01	Rice	golgi	85.82	88.97
EER98731	Sorghum	plastid	68.09	78.69
GSMUA_Achr4P02670_001	Banana	golgi	64.07	77.65
GSMUA_Achr5P09200_001	Banana	golgi	64.3	76.62
EER94859	Sorghum	extracellular, golgi	64.07	76.34
GSMUA_Achr6P22620_001	Banana	golgi, mitochondrion	62.41	75.64
GSMUA_Achr9P00170_001	Banana	extracellular, golgi	62.17	75.36
AT4G10960.1	Thale cress	golgi	61.23	73.79
Bra019257.1-P	Field mustard	plastid	60.28	73.28
CDY47611	Canola	golgi	60.28	73.28
CDY40862	Canola	cytosol, golgi	60.05	73.2
CDY03506	Canola	cytosol, golgi	60.05	72.99
Bra013744.1-P	Field mustard	cytosol, golgi	60.05	72.99
Bra035262.1-P	Field mustard	golgi	59.81	72.91
CDX86828	Canola	golgi	59.81	72.91
CDY47846	Canola	golgi	59.1	72.89
Bra027732.1-P	Field mustard	golgi	59.1	72.89
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	59.57	72.41
PGSC0003DMT400012829	Potato	cytosol, extracellular, golgi	59.57	72.41
CDY50431	Canola	cytosol	59.57	72.41
CDY08378	Canola	golgi	58.87	72.17
AT1G64440.1	Thale cress	cytosol, golgi	59.34	72.13
AT4G23920.1	Thale cress	cytosol	59.57	72.0
KXG36042	Sorghum	cytosol	54.61	63.46
GSMUA_Achr8P27530_001	Banana	cytosol, golgi, plastid	63.12	62.97
GSMUA_Achr3P16370_001	Banana	golgi, mitochondrion, plastid	61.7	60.28
GSMUA_Achr9P06140_001	Banana	plastid	63.12	51.25
GSMUA_Achr6P26620_001	Banana	plastid	63.36	49.91
EER95001	Sorghum	mitochondrion	36.88	38.33
KXG27129	Sorghum	mitochondrion, plastid	35.46	36.14
EER95854	Sorghum	mitochondrion, plastid	35.93	35.35
OQU75981	Sorghum	endoplasmic reticulum	21.04	20.23
EES05940	Sorghum	endoplasmic reticulum, golgi, plastid	20.8	20.05
EES14210	Sorghum	cytosol, extracellular, golgi, plastid	21.51	19.0
EER95171	Sorghum	plastid	21.51	18.96
EER99141	Sorghum	cytosol, endoplasmic reticulum, golgi, plastid	21.28	18.22
EER95086	Sorghum	cytosol, mitochondrion, plastid	21.28	13.39
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	20.8	13.1
KXG21627	Sorghum	mitochondrion	20.09	12.39
EES07456	Sorghum	cytosol, peroxisome, plastid	2.36	3.26

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.8	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EntrezGene:8071050
UniProt:C5YKH3	EnsemblPlants:EES14924	ProteinID:EES14924	ProteinID:EES14924.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016853
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43725	PANTHER:PTHR43725:SF5	MetaCyc:PWY-3821
MetaCyc:PWY-6317	MetaCyc:PWY-6397	MetaCyc:PWY-6527	MetaCyc:PWY-7328	MetaCyc:PWY-7344	EnsemblPlantsGene:SORBI_3007G114500
SUPFAM:SSF51735	unigene:Sbi.14231	TIGRFAMs:TIGR01179	InterPro:UDP_G4E	UniParc:UPI0001A879A9	RefSeq:XP_002445429.1

Description

hypothetical protein

Coordinates

chr7:-:49507747..49515817

Molecular Weight (calculated)

46195.4 Da

IEP (calculated)

8.617

GRAVY (calculated)

-0.435

Length

423 amino acids

Sequence
(BLAST)

001: MAVEKTLPGA NAGRTVLVTG GAGYIGSHAV LQLLLAGFRA VVVDNLNNSS ELAVRRVAAL AGDHSRNLSF HKIDLRDKGT LEMVFASTRF DAVVHFAGLK
101: AVGESVQKPL LYYDNNVIGT INLLEVMSAH GCKKLVFSSS AAVYGSPRNS PCTEEFPLTP NNPYGKTKLV VEDICRDIYR SDPEWKIILL RYFNPVGAHP
201: SGYLGEDPRG IPNNLMPYVQ QVAVGRRPAL TVLGNDYATR DGTGVRDYIH VVDLADGHIA ALQKLFENSS IGCEAYNLGT GRGTSVLEIV KAFEKASGKK
301: IPLIFGERRP GDAEILFSET TKAERELNWK AKYGIEEMCR DQWNWASKNP YGYGSLDSTK QNGHQTNGSA DSSKQNGHHT NGSTDSPKRN DHYAYGSADS
401: PKRNGHYVYG SSDFKQNGNG HLR

Best Arabidopsis Sequence Match ( AT4G10960.1 )
(BLAST)

001: MMARNVLVSG GAGYIGSHTV LQLLLGGYSV VVVDNLDNSS AVSLQRVKKL AAEHGERLSF HQVDLRDRSA LEKIFSETKF DAVIHFAGLK AVGESVEKPL
101: LYYNNNLVGT ITLLEVMAQH GCKNLVFSSS ATVYGSPKEV PCTEEFPISA LNPYGRTKLF IEEICRDVYG SDPEWKIILL RYFNPVGAHP SGDIGEDPRG
201: IPNNLMPFVQ QVAVGRRPHL TVFGNDYNTK DGTGVRDYIH VIDLADGHIA ALRKLEDCKI GCEVYNLGTG NGTSVLEMVD AFEKASGKKI PLVIAGRRPG
301: DAEVVYASTE RAESELNWKA KYGIEEMCRD LWNWASNNPY GYDSSSEDNS H

Arabidopsis Description

UGE5UDP-glucose 4-epimerase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN58]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.