Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 2
- golgi 3
- extracellular 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | EES09373 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | EES16732 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 92.51 | 93.84 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 86.03 | 85.34 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 82.39 | 85.15 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 81.98 | 84.2 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 81.98 | 84.02 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 78.54 | 81.0 |
| HORVU5Hr1G075660.1 | Barley | plastid | 80.77 | 78.54 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 62.55 | 69.75 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 61.54 | 68.62 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 60.93 | 67.79 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 55.26 | 65.62 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 59.31 | 64.97 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 58.5 | 64.51 |
| Solyc09g092330.1.1 | Tomato | nucleus | 58.91 | 64.38 |
| CDX77481 | Canola | endoplasmic reticulum | 58.91 | 64.24 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 58.91 | 64.1 |
| CDX85133 | Canola | endoplasmic reticulum | 58.91 | 63.82 |
| CDY64583 | Canola | endoplasmic reticulum | 59.31 | 63.7 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 59.31 | 63.7 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 59.11 | 63.48 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 58.91 | 63.26 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 55.47 | 63.13 |
| KRG97348 | Soybean | endoplasmic reticulum | 56.07 | 63.1 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 58.1 | 62.94 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 61.74 | 62.89 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 57.69 | 62.78 |
| KRH31569 | Soybean | mitochondrion | 58.7 | 62.77 |
| CDX92990 | Canola | endoplasmic reticulum | 57.89 | 62.72 |
| CDY53207 | Canola | endoplasmic reticulum | 57.69 | 62.64 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 54.45 | 62.12 |
| EES05940 | Sorghum | endoplasmic reticulum, golgi, plastid | 54.05 | 60.82 |
| OQU75981 | Sorghum | endoplasmic reticulum | 53.44 | 60.0 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 55.67 | 55.78 |
| EER95171 | Sorghum | plastid | 53.85 | 55.42 |
| KXG36042 | Sorghum | cytosol | 19.43 | 26.37 |
| EER98731 | Sorghum | plastid | 19.03 | 25.68 |
| EER94859 | Sorghum | extracellular, golgi | 17.81 | 24.79 |
| KXG27129 | Sorghum | mitochondrion, plastid | 18.42 | 21.93 |
| EER95001 | Sorghum | mitochondrion | 18.02 | 21.87 |
| EES14924 | Sorghum | endoplasmic reticulum, golgi, plastid | 18.22 | 21.28 |
| EER95854 | Sorghum | mitochondrion, plastid | 18.02 | 20.7 |
| EER95078 | Sorghum | cytosol, mitochondrion, peroxisome | 18.02 | 13.24 |
| EER95086 | Sorghum | cytosol, mitochondrion, plastid | 17.61 | 12.95 |
| KXG21627 | Sorghum | mitochondrion | 17.21 | 12.39 |
| EES07456 | Sorghum | cytosol, peroxisome, plastid | 2.83 | 4.56 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EntrezGene:8058966 | UniProt:C5X4N6 | EnsemblPlants:EER99141 |
| ProteinID:EER99141 | ProteinID:EER99141.1 | InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016857 | GO:GO:0050662 | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF01370 | PRINTS:PR01713 |
| PANTHER:PTHR43574 | PANTHER:PTHR43574:SF7 | EnsemblPlantsGene:SORBI_3002G256100 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI0001A83BF9 |
| RefSeq:XP_002462620.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:64224309..64226014
Molecular Weight (calculated)
52182.2 Da
IEP (calculated)
10.184
GRAVY (calculated)
-0.011
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLSGITAVD AAGKGMKLER YASGGALLLR RATSAKLVSA SSHLLFRATV LATLALVFLF TLHYPSLLSR SFHLSAGAGD DSAGGGAHST SASHRSLLMS
101: SSASASYGGA AWEKEVRRSA RPSRDGGISV LVTGAAGFVG THCSLALKAR GDGVLGLDNF NSYYDPSLKR ARQALLASRG VVVLDADIND GLLLEKLFDV
201: AAFTHVLHLA AQAGVRYAME APQTYVASNV AGLVSVFEVA AKHADPQPAI VWASSSSVYG LNTDAPFSED HRTDRPASLY AATKKAGEAI AHTYNHIYGL
301: SITGLRFFTV YGPWGRPDMA YFFFARSIVA GEPITLFRAA DGSDARRDFT YIDDVVKGCL GALDTAGKST GSRSGKKSGP APLRVYNLGN TSPVPVTRMV
401: AILEKLLGKK ANKRIVTMPS NGDVPFTHAN VSHAAHDFGY RPTTSLEAGL RHFVDWFVNY YKLDTKIAKG ARSSAAADKP AKKKKAAAAM SASS
101: SSASASYGGA AWEKEVRRSA RPSRDGGISV LVTGAAGFVG THCSLALKAR GDGVLGLDNF NSYYDPSLKR ARQALLASRG VVVLDADIND GLLLEKLFDV
201: AAFTHVLHLA AQAGVRYAME APQTYVASNV AGLVSVFEVA AKHADPQPAI VWASSSSVYG LNTDAPFSED HRTDRPASLY AATKKAGEAI AHTYNHIYGL
301: SITGLRFFTV YGPWGRPDMA YFFFARSIVA GEPITLFRAA DGSDARRDFT YIDDVVKGCL GALDTAGKST GSRSGKKSGP APLRVYNLGN TSPVPVTRMV
401: AILEKLLGKK ANKRIVTMPS NGDVPFTHAN VSHAAHDFGY RPTTSLEAGL RHFVDWFVNY YKLDTKIAKG ARSSAAADKP AKKKKAAAAM SASS
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.