Factsheet for TraesCS5A01G281600.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23820.1	TraesCS4A01G206200.2	AT4G09570.1	19130088
AT3G23820.1	TraesCS4B01G109800.2	AT4G09570.1	19130088
AT3G23820.1	TraesCS4D01G107200.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5A01G107900.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5B01G115400.1	AT4G09570.1	19130088
AT3G23820.1	TraesCS5D01G122800.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G288700.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	97.51	97.71
TraesCS5B01G280700.1	Wheat	endoplasmic reticulum	95.44	96.23
HORVU5Hr1G075660.1	Barley	plastid	93.36	88.58
Zm00001d021026_P001	Maize	endoplasmic reticulum	83.4	82.55
EER99141	Sorghum	cytosol, endoplasmic reticulum, golgi, plastid	84.02	81.98
Os09t0504000-01	Rice	cytosol, endoplasmic reticulum, golgi	82.57	79.92
TraesCS7A01G256600.1	Wheat	plastid	79.25	77.96
GSMUA_Achr8P00950_001	Banana	cytosol, endoplasmic reticulum, golgi	62.03	67.49
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	61.62	67.04
GSMUA_Achr8P08790_001	Banana	endoplasmic reticulum, nucleus, peroxisome	60.37	65.54
KRH58854	Soybean	endoplasmic reticulum, golgi	54.77	63.46
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	58.92	62.97
PGSC0003DMT400053071	Potato	cytosol, endoplasmic reticulum, golgi, plastid	58.3	62.72
Solyc09g092330.1.1	Tomato	nucleus	58.71	62.61
CDX77481	Canola	endoplasmic reticulum	58.3	62.03
Bra014987.1-P	Field mustard	endoplasmic reticulum	58.3	61.89
CDX85133	Canola	endoplasmic reticulum	58.3	61.62
PGSC0003DMT400040718	Potato	cytosol, endoplasmic reticulum, golgi	55.39	61.52
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	58.51	61.3
CDY64583	Canola	endoplasmic reticulum	58.51	61.3
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	58.51	61.3
KRG97348	Soybean	endoplasmic reticulum	55.81	61.28
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	57.88	61.18
PGSC0003DMT400011867	Potato	cytosol, endoplasmic reticulum, golgi	57.47	61.01
CDX92990	Canola	endoplasmic reticulum	57.68	60.96
CDY53207	Canola	endoplasmic reticulum	57.47	60.88
AT3G23820.1	Thale cress	endoplasmic reticulum	58.09	60.87
GSMUA_Achr7P02740_001	Banana	endoplasmic reticulum	61.0	60.62
KRH31569	Soybean	mitochondrion	58.09	60.61
TraesCS6A01G353200.1	Wheat	plastid	54.98	60.5
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	53.73	59.82
TraesCS7A01G152300.1	Wheat	endoplasmic reticulum	53.94	58.69
TraesCS4A01G080300.1	Wheat	plastid	54.98	55.44
KRH42756	Soybean	extracellular, golgi, plastid	55.39	54.16
TraesCS1A01G443900.1	Wheat	endoplasmic reticulum, golgi	17.43	23.73
TraesCS5A01G314800.1	Wheat	cytosol	17.84	23.37
TraesCS5A01G183100.1	Wheat	plastid	17.01	21.87
TraesCS7A01G311100.1	Wheat	golgi	17.84	21.23
TraesCS1A01G315300.1	Wheat	cytosol, mitochondrion, plastid	16.18	21.2
TraesCS2A01G460400.1	Wheat	unclear	17.84	20.87
TraesCS5A01G291300.1	Wheat	golgi	18.05	20.67
TraesCS4A01G099200.1	Wheat	cytosol	18.67	13.33
TraesCS6A01G257500.1	Wheat	peroxisome	3.11	5.0

Protein Annotations

EnsemblPlants:TraesCS5A01G281600.1	EnsemblPlantsGene:TraesCS5A01G281600	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	GO:GO:0050662	InterPro:Epimerase_deHydtase
InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PANTHER:PTHR43574	PANTHER:PTHR43574:SF7	PFAM:PF01370	PRINTS:PR01713
SEG:seg	SUPFAM:SSF51735	TMHMM:TMhelix	MapMan:3.13.4.1	:	:

Description

No Description!

Coordinates

chr5A:-:490815207..490816655

Molecular Weight (calculated)

51402.2 Da

IEP (calculated)

10.262

GRAVY (calculated)

-0.066

Length

482 amino acids

Sequence
(BLAST)

001: MPSDAAAKGV KLERYASGGA LLLRRVASGK FVSASSHLLF RATVLATLAL VFLFALHYPS LLSRSFSLAS DGSSSSVPGA SRSHASHRSL LASSSAAATY
101: GGERWQKEIR RSAKPRRDEG LSVLVTGAGG FVGAHCSLAL KARGDGVVGL DNFNSYYDPA LKRGRQQLLA DRGVVVLDAD INDALLLERL FEAVPFTHVL
201: HLAAQAGVRY AMEAPQTYVA SNVAGLVSVF EAAAKHADPQ PAVVWASSSS VYGLNTDAPF SEDHRTDRPA SLYAATKKAG EAIAHAYNHI YGLSITGLRF
301: FTVYGPWGRP DMAYFSFARS IVAGEPITLY ADARRDFTYI DDVVKGCVGA LDTAGRSTGS ARSGKKSGPA PLRVYNLGNT SPVPVTRMVA ILEKLLGKKA
401: NKRIIAMPSN GDVPFTHANV SHAAHDFGYR PTTSLDAGLR HFVDWFVQYY KLDIKIAKPS TTSKKPATAT KKKASTMSAA SS

Best Arabidopsis Sequence Match ( AT3G23820.1 )
(BLAST)

001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA

Arabidopsis Description

GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.