Factsheet for TraesCS6A01G353200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, golgi, plastid
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G385900.1	Wheat	plastid	100.0	100.0
TraesCS6D01G335600.1	Wheat	plastid	99.77	99.77
EES05940	Sorghum	endoplasmic reticulum, golgi, plastid	94.98	94.76
Os02t0791500-01	Rice	endoplasmic reticulum, golgi, plastid	94.29	94.51
Zm00001d018350_P001	Maize	plasma membrane	93.15	92.94
TraesCS7A01G152300.1	Wheat	endoplasmic reticulum	88.13	87.13
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	75.8	82.18
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	75.8	81.98
KRH02967	Soybean	nucleus	80.59	81.9
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	77.4	81.69
KRH72376	Soybean	endoplasmic reticulum, mitochondrion	80.14	81.44
AT4G30440.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	79.0	80.65
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	76.03	80.43
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	78.77	80.42
CDY70926	Canola	cytosol, endoplasmic reticulum, golgi, plastid	78.77	80.42
CDY28188	Canola	cytosol, endoplasmic reticulum, golgi, plastid	78.77	80.42
PGSC0003DMT400020223	Potato	endoplasmic reticulum	79.0	80.28
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	77.85	80.24
Solyc07g006220.1.1	Tomato	nucleus	77.63	80.0
CDX72242	Canola	cytosol, endoplasmic reticulum, golgi, plastid	78.31	79.77
CDY39205	Canola	cytosol, endoplasmic reticulum, golgi, plastid	78.08	79.53
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	77.4	78.84
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	77.63	78.7
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	58.45	66.49
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	75.8	64.97
TraesCS4A01G080300.1	Wheat	plastid	61.87	56.69
TraesCS7A01G256600.1	Wheat	plastid	61.64	55.1
TraesCS5A01G281600.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	60.5	54.98
TraesCS5A01G314800.1	Wheat	cytosol	20.55	24.46
TraesCS1A01G443900.1	Wheat	endoplasmic reticulum, golgi	19.41	24.01
TraesCS5A01G183100.1	Wheat	plastid	19.86	23.2
TraesCS7A01G311100.1	Wheat	golgi	21.23	22.96
TraesCS2A01G460400.1	Wheat	unclear	20.55	21.84
TraesCS5A01G291300.1	Wheat	golgi	20.09	20.9
TraesCS1A01G315300.1	Wheat	cytosol, mitochondrion, plastid	17.35	20.65
TraesCS4A01G099200.1	Wheat	cytosol	19.86	12.89
TraesCS6A01G257500.1	Wheat	peroxisome	2.74	4.0

Protein Annotations

EnsemblPlants:TraesCS6A01G353200.1	EnsemblPlantsGene:TraesCS6A01G353200	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
InterPro:Nuc_sugar_epim	PANTHER:PTHR43574	PANTHER:PTHR43574:SF17	PFAM:PF16363	PRINTS:PR01713	SEG:seg
SUPFAM:SSF51735	TMHMM:TMhelix	MapMan:3.13.4.1	:	:	:

Description

No Description!

Coordinates

chr6A:+:585108581..585109897

Molecular Weight (calculated)

47814.3 Da

IEP (calculated)

10.143

GRAVY (calculated)

-0.148

Length

438 amino acids

Sequence
(BLAST)

001: MRALEDDLFP STPGKVKIER AGGTMNRQLH RCFASTSTMF LWALFLVAMT ASYLSFQSFV DTSSKYFAAS WGGLHWERQI RASAAPRRPP GSAAGAGMSV
101: LVTGASGFVG AHCSLALRKR GDGVVGIDNF NAYYDPSLKK ARKALLTSHG VFVVEGDIND GRLLAKLFDV VPFTHVLHLA AQAGVRYAME NPASYVHSNV
201: AGLVTLLEAC KNADPQPAIV WASSSSVYGL NDKVPFSESH RTDQPASLYA ATKKAGEEIT HSYNHIYGLS ITGLRFFTVY GPWGRPDMAY FSFTRNILQG
301: KPITVYRGKN HVDLARDFTY IDDIVKGCLG SLDTAGRSTG TGGKKRGPAP YRIFNLGNTS PVTVPTLVAI LEKHLRVKAR KHVVEMPGNG DVPFTHANIS
401: LARQQLGYKP ATNLDAGLKK FVKWYLSYYG YTRGSKNL

Best Arabidopsis Sequence Match ( AT4G30440.1 )
(BLAST)

001: MPSIEDELFP STPGKFKIDR SNRQLHRCFA STSTMFLWAL FLIALTASYL SFQSFVDSGS RYLTASWGGI QWEKQVRTSA QIHRSGGISV LVTGATGFVG
101: SHVSLALRKR GDGVVGLDNF NNYYDPSLKR ARRSLLSSRG IFVVEGDLND AKLLAKLFDV VAFTHVMHLA AQAGVRYALE NPQSYVHSNI AGLVNLLEIC
201: KAANPQPAIV WASSSSVYGL NEKVPFSESD RTDQPASLYA ATKKAGEEIT HTYNHIYGLA ITGLRFFTVY GPWGRPDMAY FSFTRNILQG KPITIYRGKN
301: RVDLARDFTY IDDIVKGCLG SLDSSGKSTG SGGKKRGAAP YRIFNLGNTS PVTVPILVDI LEKHLKVKAK RNFVEMPGNG DVPFTHANIS SARNEFGYKP
401: TTDLETGLKK FVRWYLSYYG YNTKAKLVH

Arabidopsis Description

GAE1GAE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXF7]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.