Factsheet for Solyc07g006220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 1
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	98.82	98.82
KRH02967	Soybean	nucleus	85.65	84.45
CDY28188	Canola	cytosol, endoplasmic reticulum, golgi, plastid	85.18	84.38
CDY70926	Canola	cytosol, endoplasmic reticulum, golgi, plastid	85.18	84.38
AT4G30440.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	85.18	84.38
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	84.94	84.15
KRH72376	Soybean	endoplasmic reticulum, mitochondrion	85.18	83.99
CDX72242	Canola	cytosol, endoplasmic reticulum, golgi, plastid	84.47	83.49
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	84.71	83.33
CDY39205	Canola	cytosol, endoplasmic reticulum, golgi, plastid	84.24	83.26
Bra024075.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	83.53	82.56
Os02t0791500-01	Rice	endoplasmic reticulum, golgi, plastid	80.47	78.26
EES05940	Sorghum	endoplasmic reticulum, golgi, plastid	80.24	77.68
TraesCS6D01G335600.1	Wheat	plastid	80.0	77.63
TraesCS6B01G385900.1	Wheat	plastid	80.0	77.63
TraesCS6A01G353200.1	Wheat	plastid	80.0	77.63
Zm00001d018350_P001	Maize	plasma membrane	79.76	77.22
HORVU5Hr1G060660.3	Barley	mitochondrion	71.06	76.84
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	72.94	76.73
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	72.71	76.3
Os06t0187200-01	Rice	golgi, peroxisome	55.29	76.05
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	74.12	75.9
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	73.41	75.36
Zm00001d045078_P001	Maize	extracellular, golgi	72.47	74.58
OQU75981	Sorghum	endoplasmic reticulum	76.94	74.32
TraesCS7D01G154100.1	Wheat	golgi	74.82	73.44
Zm00001d037087_P001	Maize	endoplasmic reticulum	76.0	73.41
TraesCS7A01G152300.1	Wheat	endoplasmic reticulum	76.0	72.91
TraesCS7B01G056200.1	Wheat	endoplasmic reticulum, golgi, peroxisome	75.53	72.46
Solyc03g083550.1.1	Tomato	golgi	65.18	68.23
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	66.35	64.83
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	66.12	64.6
Solyc01g091200.2.1	Tomato	nucleus	65.88	64.37
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	64.47	63.28
Solyc08g079440.1.1	Tomato	nucleus	65.88	62.92
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	55.53	61.3
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	71.53	59.49
Solyc09g092330.1.1	Tomato	nucleus	63.06	59.29
Solyc08g082440.2.1	Tomato	cytosol, golgi	22.12	26.78
Solyc08g080570.2.1	Tomato	cytosol	22.12	26.78
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	21.88	26.72
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	21.88	22.3
Solyc02g030230.2.1	Tomato	mitochondrion	21.18	21.63
Solyc12g006410.1.1	Tomato	unclear	19.76	21.05
Solyc07g043550.2.1	Tomato	cytosol, unclear	14.12	19.87
Solyc08g069110.2.1	Tomato	unclear	20.24	13.21
Solyc07g062130.2.1	Tomato	extracellular, unclear	20.71	13.06
Solyc10g007480.2.1	Tomato	nucleus	15.29	11.02
Solyc08g080140.2.1	Tomato	extracellular	3.06	4.32

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016857
UniProt:K4CB93	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF16363	PRINTS:PR01713
PANTHER:PTHR43574	PANTHER:PTHR43574:SF17	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc07g006220.1	EnsemblPlants:Solyc07g006220.1.1	TMHMM:TMhelix
UniParc:UPI000276C3B7	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:1040113..1041390

Molecular Weight (calculated)

47325.7 Da

IEP (calculated)

10.056

GRAVY (calculated)

-0.264

Length

425 amino acids

Sequence
(BLAST)

001: MPSLEEELFP STPGKFKDRN RHFHRCFAST SNMFLWALFL IALTASYLCF QSFMDSGNRY FTSTWGGHHW ERNVINSAQI RRSHGGMSVL VTGAAGFVGS
101: HVSLALKKRG DGVVGIDNFN NYYDPSLKKA RKNLLTQNSI FIVDGDINDS KLLVKLFDIA RFTHVMHLAA QAGVRYAMEN PGSYIHSNIA GLVSLLEVCK
201: NSNPQPAIVW ASSSSVYGLN EKVPFSESDR TDQPASLYAA TKKAGEEITH TYNHIYGLSI TGLRFFTVYG PWGRPDMAYF SFTRNILQGK PITVYRGKNR
301: VDLARDFTYI DDVVKGCIGS LDTSGKSTGS GGKKRGPAPY RIFNLGNTSP VTVPMMVAML EKHLKVKAKK NFVVMPGNGD VPFTHANISS ARKEFGYKPT
401: TDLQTGLKKF VKWYLSYYGY DQGKL

Best Arabidopsis Sequence Match ( AT4G30440.1 )
(BLAST)

001: MPSIEDELFP STPGKFKIDR SNRQLHRCFA STSTMFLWAL FLIALTASYL SFQSFVDSGS RYLTASWGGI QWEKQVRTSA QIHRSGGISV LVTGATGFVG
101: SHVSLALRKR GDGVVGLDNF NNYYDPSLKR ARRSLLSSRG IFVVEGDLND AKLLAKLFDV VAFTHVMHLA AQAGVRYALE NPQSYVHSNI AGLVNLLEIC
201: KAANPQPAIV WASSSSVYGL NEKVPFSESD RTDQPASLYA ATKKAGEEIT HTYNHIYGLA ITGLRFFTVY GPWGRPDMAY FSFTRNILQG KPITIYRGKN
301: RVDLARDFTY IDDIVKGCLG SLDSSGKSTG SGGKKRGAAP YRIFNLGNTS PVTVPILVDI LEKHLKVKAK RNFVEMPGNG DVPFTHANIS SARNEFGYKP
401: TTDLETGLKK FVRWYLSYYG YNTKAKLVH

Arabidopsis Description

GAE1GAE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXF7]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.