Factsheet for Solyc01g091200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
endoplasmic reticulum 2
golgi 3
extracellular 1
vacuole 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066897	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	98.39	99.3
Solyc05g050990.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion	90.11	90.11
Solyc10g018260.1.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	89.43	89.43
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	86.67	87.07
VIT_15s0048g00330.t01	Wine grape	plastid	85.29	86.89
AT4G00110.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	85.29	86.28
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	84.83	85.81
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	84.83	85.81
AT1G02000.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	84.83	85.02
KRH76209	Soybean	endoplasmic reticulum, plastid	85.52	84.93
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	85.52	84.93
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	86.21	80.65
Solyc03g083550.1.1	Tomato	golgi	70.57	75.62
Solyc08g079440.1.1	Tomato	nucleus	74.48	72.81
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	66.21	66.67
Solyc07g006220.1.1	Tomato	nucleus	64.37	65.88
Solyc09g092330.1.1	Tomato	nucleus	65.06	62.61
Solyc05g053790.1.1	Tomato	cytosol, endoplasmic reticulum, golgi	62.3	62.59
Solyc08g080570.2.1	Tomato	cytosol	20.92	25.93
Solyc12g055930.1.1	Tomato	cytosol, extracellular, golgi	20.0	25.0
Solyc08g082440.2.1	Tomato	cytosol, golgi	19.08	23.65
Solyc12g006410.1.1	Tomato	unclear	19.77	21.55
Solyc02g030230.2.1	Tomato	mitochondrion	20.0	20.91
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	20.0	20.86
Solyc07g043550.2.1	Tomato	cytosol, unclear	13.79	19.87
Solyc08g069110.2.1	Tomato	unclear	20.0	13.36
Solyc07g062130.2.1	Tomato	extracellular, unclear	20.69	13.35
Solyc10g007480.2.1	Tomato	nucleus	15.4	11.36
Solyc08g080140.2.1	Tomato	extracellular	2.76	3.99

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	GO:GO:0050662
UniProt:K4AZ60	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF01370	PRINTS:PR01713	PANTHER:PTHR43574
PANTHER:PTHR43574:SF22	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc01g091200.2	EnsemblPlants:Solyc01g091200.2.1	TMHMM:TMhelix	UniParc:UPI0002768007
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:84887846..84889721

Molecular Weight (calculated)

48075.0 Da

IEP (calculated)

10.392

GRAVY (calculated)

-0.182

Length

435 amino acids

Sequence
(BLAST)

001: MSQMMHIDNI PSTPGKFKME KSPYNRLRMH FSLAKLTFWS FVFLGLIFVF FYRSPASSSP VSSDLSRRSL RTSSYGGPAW EKRIKASAKV RSRNGISVLV
101: TGAAGFVGTH VSVALKRRGD GVLGLDNFND YYDPSLKRAR QALLERTGVY VVEGDINDAT LLKKLFDIVP FTHVMHLAAQ AGVRYAMENP GSYVHSNIAG
201: LVNVLEICKS VNPQPAIVWA SSSSVYGLNT KVPFSEKDRT DQPASLYAAT KKAGEEIAHT YNHIYGLSLT GLRFFTVYGP WGRPDMAYFF FTRDILKGKS
301: IPIFEAANHG TVARDFTYID DIVKGCLAAL DTAEKSTGSG GKKKGAAQLR VFNLGNTSPV PVSDLVGILE RLLKVKAKRL VMKLPRNGDV PFTHANISSA
401: HKELGYKPTT DLQTGLKKFV RWYLNYYGNG KKSAQ

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.