Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- golgi 6
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400059216 | Potato | cytosol | 34.73 | 94.0 |
| VIT_15s0048g00330.t01 | Wine grape | plastid | 74.63 | 70.96 |
| Solyc01g091200.2.1 | Tomato | nucleus | 75.62 | 70.57 |
| VIT_15s0048g00340.t01 | Wine grape | endoplasmic reticulum, plastid | 75.12 | 70.44 |
| Solyc05g050990.1.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion | 74.63 | 69.66 |
| Solyc10g018260.1.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion, plastid | 74.14 | 69.2 |
| VIT_15s0048g00320.t01 | Wine grape | cytosol, endoplasmic reticulum, golgi, mitochondrion | 75.37 | 65.81 |
| Solyc07g006220.1.1 | Tomato | nucleus | 68.23 | 65.18 |
| Solyc08g079440.1.1 | Tomato | nucleus | 71.18 | 64.94 |
| Solyc12g010540.1.1 | Tomato | endoplasmic reticulum | 68.47 | 64.35 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 65.76 | 61.66 |
| Solyc09g092330.1.1 | Tomato | nucleus | 66.75 | 59.96 |
| Solyc08g080570.2.1 | Tomato | cytosol | 22.41 | 25.93 |
| Solyc12g055930.1.1 | Tomato | cytosol, extracellular, golgi | 21.67 | 25.29 |
| Solyc08g082440.2.1 | Tomato | cytosol, golgi | 20.69 | 23.93 |
| Solyc12g006410.1.1 | Tomato | unclear | 21.18 | 21.55 |
| Solyc02g069580.2.1 | Tomato | golgi, mitochondrion | 21.18 | 20.62 |
| Solyc02g030230.2.1 | Tomato | mitochondrion | 20.94 | 20.43 |
| Solyc07g043550.2.1 | Tomato | cytosol, unclear | 15.02 | 20.2 |
| Solyc08g069110.2.1 | Tomato | unclear | 21.18 | 13.21 |
| Solyc07g062130.2.1 | Tomato | extracellular, unclear | 21.92 | 13.2 |
| Solyc10g007480.2.1 | Tomato | nucleus | 16.5 | 11.36 |
| Solyc08g080140.2.1 | Tomato | extracellular | 2.96 | 3.99 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016857 | GO:GO:0050662 |
| UniProt:K4BID1 | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF01370 | PRINTS:PR01713 | PANTHER:PTHR43574 |
| PANTHER:PTHR43574:SF20 | SUPFAM:SSF51735 | EnsemblPlantsGene:Solyc03g083550.1 | EnsemblPlants:Solyc03g083550.1.1 | TMHMM:TMhelix | UniParc:UPI0002768CDC |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:53489889..53491109
Molecular Weight (calculated)
45282.3 Da
IEP (calculated)
10.301
GRAVY (calculated)
-0.269
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKHRRWTYS ITKLVFWATI FAGAFLFFCF RSSPPSHSTT MKWGSSSNTP QWEKRVRLSA RSRSGHLSVL VTGAAGFVGS HVSAALKRRG DGVVGLDNFN
101: SYYDPSLKRA RQKLLEQKGV FVMEGDINDE KLLKKLFDIV EFTHVMHLAA QAGVRYAMKN PGSYIHSNIA GLVTLFEACK SANPQPSIVW ASSSSVYGLN
201: SKVPFSEKDQ TDQPASLYAA TKKAGEEIAH TYNHIYGLSI TGLRFFTVYG PWGRPDMAYF FFTKNILKGK PISVFQGSNN KSVARDFTYI DDIVKGCLGA
301: LDTAEKSTGS GGKKKKNAQL RVFNLGNTSP VPVTKLVSIL EKLLKVKAKR NVLPLPTNGD VMFTHANISY AHKEFGYKPT TDLQTGLHKF VNWYLDYYSV
401: SEKKIY
101: SYYDPSLKRA RQKLLEQKGV FVMEGDINDE KLLKKLFDIV EFTHVMHLAA QAGVRYAMKN PGSYIHSNIA GLVTLFEACK SANPQPSIVW ASSSSVYGLN
201: SKVPFSEKDQ TDQPASLYAA TKKAGEEIAH TYNHIYGLSI TGLRFFTVYG PWGRPDMAYF FFTKNILKGK PISVFQGSNN KSVARDFTYI DDIVKGCLGA
301: LDTAEKSTGS GGKKKKNAQL RVFNLGNTSP VPVTKLVSIL EKLLKVKAKR NVLPLPTNGD VMFTHANISY AHKEFGYKPT TDLQTGLHKF VNWYLDYYSV
401: SEKKIY
001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA
Arabidopsis Description
GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.